Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02358 ATGAACAGCACTTACATTTCTGATTACAACCCTTCAGAGAACTCAAATATGTTAACATATTACTATCTTGGAATGTCTTTTGCCTTTATCTTTCTAATGATGTTCATATCTCTATGTACATATTACTGTAAAAACAGAAACTGGCAAAACATGTTACAATCTAGTGGCAGCAGCAATTCCAACAGAACGGTAATCATGATGGAGAGAGATCATACCGAGTTGAATATTGAAGTTTGTGAGGAAGAACAAGATGCAATCCTGAATAGTTACCCTATTTTGTTGTATTCACAAGTCAAGCTTCATAAGGCTGATTCAACATCACTCACTTGCTCAATATGTTTAGGAGATTATAAAGATTCAGAGTTGTTGCAACTCTTGTCTGATTGTGGTCACTTTTTTCATAAGGAGTGTGTTGCTACATGGTTTAGGCTAAACCTCTCATGTCCCATGTGTCGGAGCTCGCCACTACCAACACCCATTGCTCAAGTTGCACCTTTGCCAACTACACATGATTGA 516 0.376 MNSTYISDYNPSENSNMLTYYYLGMSFAFIFLMMFISLCTYYCKNRNWQNMLQSSGSSNSNRTVIMMERDHTELNIEVCEEEQDAILNSYPILLYSQVKLHKADSTSLTCSICLGDYKDSELLQLLSDCGHFFHKECVATWFRLNLSCPMCRSSPLPTPIAQVAPLPTTHD 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02358 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 162 IPR045899 -
Vifa3g02358 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 156 IPR013083 -
Vifa3g02358 171 Pfam Ring finger domain 109 152 IPR001841 -
Vifa3g02358 171 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Vifa3g02358 171 SMART ring_2 110 151 IPR001841 -
Vifa3g02358 171 SUPERFAMILY RING/U-box 86 156 - -
Vifa3g02358 171 SMART ringv_2 109 152 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02358 Vifa-Chr3 604099521 604100036 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02358 21 166 C3H Transcription Factor Family AT2G35910 41.333 1.02e-27 101