Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02337 ATGACGAGAAGGAAGGTGAAACTTGCATTTATCTGTGATGATACAGCAAGAAAAGCAAGCTACAATAAAAGAAAGAAAGGTCTGATTAAGAAGGTAAGAGAACTCACAACTCTTTGTGGTATTCCAGCTTGTGCTATAATTTCAAGTCCTTTTGATTCTCAACCAGAGGTGTGGCCAAATCCAGAAGAAGCCATGAATGTGATTGATAGGTACAAAAATTCATCTGTGAAAGATGAAAACAGGAATGTGAACCAAGAGAGGTTCCTCATGCAGAGAATTTCCAAAGCTAGAGATCAGGTAAGAAAGTTAAAATATGATAACCGCGAACAAGAGCTGAATCTTCTTATGTTTGGTTACTTGCAAAACAACAATATTTCAGATGATTTAACTGCTGAAGAATTGCGAGATTTTGATAAGCTGGTTGAGAAGAAGCTCAAGGAGGTTGATAATAAGATTAAGAAACTTGATGCATGA 474 0.365 MTRRKVKLAFICDDTARKASYNKRKKGLIKKVRELTTLCGIPACAIISSPFDSQPEVWPNPEEAMNVIDRYKNSSVKDENRNVNQERFLMQRISKARDQVRKLKYDNREQELNLLMFGYLQNNNISDDLTAEELRDFDKLVEKKLKEVDNKIKKLDA 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02337 157 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Vifa3g02337 157 Coils Coil 93 113 - -
Vifa3g02337 157 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Vifa3g02337 157 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa3g02337 157 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa3g02337 157 PANTHER MADS BOX PROTEIN 3 153 - -
Vifa3g02337 157 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vifa3g02337 157 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa3g02337 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Vifa3g02337 157 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vifa3g02337 157 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02337 Vifa-Chr3 598977533 598978006 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02337 1 155 MADS-box Gene Family AT5G26630 45.513 1.31e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa3g02337 SRF-TF 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02337 - - gmx:100792290 194.512