Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02336 ATGGGTCACGAAACTCTCTTGCTCACTGCCCCTCCTACTACCACACTAGTGAACCACCCACTCTCAGTCTCTGTACCATCTGCTTCAGCAACAGCAACTGCTGCACCACCTACCTCCCTTGCTCCTGGATTTAGGTTTCACCCAACTGATGAGGAACTCGTTATTTATTACCTCAAGCGCAAGTTTGCTGGTAAACCCTTCCGATTTGATGCTATAGCAGAAGTTGATATCTACAAGAGTGAGCCCTGGGACCTGTCAGATAAATCAAGGCTGAAGACCAGGGACCAAGAGTGGTATTTCTTTAGTGCACTGGACAAGAAGTATGGAAATGGGGGCAGAATGAACAGGGCTACCAATAGAGGTTACTGGAAAGCTACCGGAAATGATCGTCCGGTTAAACATGACTTAAGGACTGTAGGATTGAAGAAAACTTTGGTGTTTCATAGTGGCCGAGCTCCTGATGGGAAGAGGACTAATTGGGTTATGCATGAGTACAGACTTGTTGAAGAAGAGATGGAGAGGGATGGGTCTGGACCCTCTCAGCCACAGGATGCATATGTCTTGTGTAGAGTGTTTCACAAAAATAACATAGGACCTCCAAATGGACAACGGTATGCTCCTTTTGTTGAAGAAGAGTGGGAGGAAGGATTGGGAATGGTTCCTGGAGCTGAGCCTGTGGGTGGTCCTGTTTATCACCCTCTGCGTATTGAAGGCAACAACGGCGTTTCATGCAGCGAAGAAAGAAGCATTGTTGTGAAGGACACTCATTCCAACAATAAAACTCCACTTGACGTGAACAAGCTACCAATAGAAACTCGAAATCTTCTCGCTGTGTGCAAAAGGGAGAGTATGACCGAGTACCCATCCCCAGAAAAGAATGATTTTAAGCGTATGCATGTGGATAACGAGTACCCACTCCAGATCGAAAACCCAAAACCCTTACCTCAAATATACAAAAGGCGTCGCCACAACTTGAACTCCAATCATTCCAATGTTTCCGGAGAGTCATTCCCTATCAGTCAGGATCCATGCTCTTCCACAATCACCACTGCCGCGACAACACTCCAGACAACCATGGCCCCCGCCACAACCACCAACCCAGCACCGAAAAAACATTTCCTGTCAGCACTGGTGGAGTTTTCTCTCTTGGAATCCCTCGAATCAAAGGAAAACCACACCTTGGTTCAGCCGGAGGATTTCGACTTGACAAACCTTGAATCGTCTGTGCCTCCCAGCGTTGCAAAGTACATCAAACACCTGCAAAGTGAGACACAGAAGCTTGGCGTTGAGAAGGAAACAATGCGGTTCGAGTTGACAAGCGCTCAAGCCATGATTAATATTCTTCAGTCCCGCGTCGAAACTTTGACTAAAGAGAACAGCGAAATGAAGATGATGATGAGAAATCCATAG 1410 0.4681 MGHETLLLTAPPTTTLVNHPLSVSVPSASATATAAPPTSLAPGFRFHPTDEELVIYYLKRKFAGKPFRFDAIAEVDIYKSEPWDLSDKSRLKTRDQEWYFFSALDKKYGNGGRMNRATNRGYWKATGNDRPVKHDLRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEEMERDGSGPSQPQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWEEGLGMVPGAEPVGGPVYHPLRIEGNNGVSCSEERSIVVKDTHSNNKTPLDVNKLPIETRNLLAVCKRESMTEYPSPEKNDFKRMHVDNEYPLQIENPKPLPQIYKRRRHNLNSNHSNVSGESFPISQDPCSSTITTAATTLQTTMAPATTTNPAPKKHFLSALVEFSLLESLESKENHTLVQPEDFDLTNLESSVPPSVAKYIKHLQSETQKLGVEKETMRFELTSAQAMINILQSRVETLTKENSEMKMMMRNP 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02336 469 SUPERFAMILY NAC domain 32 195 IPR036093 GO:0003677|GO:0006355
Vifa3g02336 469 Coils Coil 438 465 - -
Vifa3g02336 469 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 39 336 - -
Vifa3g02336 469 ProSiteProfiles NAC domain profile. 40 194 IPR003441 GO:0003677|GO:0006355
Vifa3g02336 469 FunFam Nac domain-containing protein 86 49 197 - -
Vifa3g02336 469 Gene3D NAC domain 49 197 IPR036093 GO:0003677|GO:0006355
Vifa3g02336 469 Pfam No apical meristem (NAM) protein 42 167 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02336 Vifa-Chr3 598509782 598516891 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02336 1 463 NAC Transcription Factor Family AT3G10480 44.324 3.91e-121 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa3g02336 NAM 1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02336 - - tpra:123908634 675.241