Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02334 ATGGCTATCTACGACGGTCCTGGGTTCCGGTTCCACCCTACCGATGAAGAGATTCTTTGCTTCTATCTGAAACGGAAGCTCACCGGAAATTTACCATCCGCTTTCGACCATCTTGCTGTTATCGATATCTACAAGTTCGAGCCCTGGGACCTTCCCAGTTTGTCGAAGCTGAAGACTAGGGATTTGGAATGGTACTTCTTCACTGTGCTGGACAAGAAGTACGGCAATAGTTTGAGGTTGAACCGTGCTACTGATAGAGGGTATTGGAAGACTACTGGGAAGGATCGCATTATCAAGAATGCGAAGGATGTTGTTGGAATGAAGAAGACTCTTGTCTATCATTCCGGGAGGGCTCCACATGGTGACAGAACCAATTGGGTTATGCATGAATACAAGATGATTGACGAGGCCTTGGCTAGAGCTGGAATGCAGAAGGACACTTATGTGATCTGTAGGGTATTTGAGAAGAGTGGTTCTGGGCCTAAGAATGGGGAGAAGTACGGGGCTCCTTTTATAGAGGCGGAATGGGAGCATGTCGGTAGATTGGTGGATCCCGTGCTGCTTGTTGGTAATGAGCTTTTGATCCAAGAAGTGTCTGCTCCTGCTCCAGCACTTGTACCTGCACTTGCTCCTGCTCCTGTTCTAGCACTTGCTCCTGCTCCTTATGTTGGTGACCTGGTAGATCCCTTGCCAACTGTTGGTAATAAGTCTTTGAAACAAGAAGTATCTGCTTCTGCTCCTACTGATGATGATTTTGTTGAGGCCAAAGACCTTGATGAGGAGTTTGATGATACTAGTGATACAGTTGTAAGTGCTGATTTGGCGTCAAACTTCTGTTATGGGGAGTGTAGCAGTCATCCTGTTCAGCATTCCCAAGCATTTATTAGTGCTCATAAGCAAATGGAATCTGAGCTTGCTTTTTATGGTAATCAGATTGATCAGCCTGATAATATGGCTGATATATTTGATTTGGCTATCAATTCAGTGCAAGATGGATACAATGGCGAGACAATCCATAATGAGAATCCTCTGAATTTCAATTTTGAATCTGAGTATCCTGATCTATACTTTGATACCTGTGGTTATTTTATGAGTGCTGAAGAAGCATATGAGGAAACCGATGATTTTAAGAATGTTGACGAGGCTATTCCCATTGAGACAGACCCTTCTGTTGCTGCTGCAATGGTAGACGAGTACCTTGCATTCCCTGAAGAAGATATTTTCCAACATGTATGCTTTGATTCTTCTTTGAATGTAGGGAGTGAAATCCCTATTGCCAATCATGGACAACCTTTCGATGAGCAGAATGTGGAGAGCGAAACCAGCGGTAGCTCATTGGCAGACAAACATGTTCTTGAAGCACAGTCAAGTAATGAACCTTCTTTCCCAGAGGGGGATGCAGAGGTGTCAAATTGGGTCTCAGGAGACGCAAATTACTTTGTAAAGCAAGCCAAGAAATTCCTGGCCCACATGCCTGCTTCACCTGCATTTGCTTCAGAGTTTCCTACTAAGGAGTTTGCACATGGGATATCTCCTGCAGCCGAGTCTTCCAATTCCTCTCACATAACCACAGGTATGATCAGCATTACAGACATTTCTATTAGAAGCGATGCGATGGATTGGATGGTGGGCAAGAATGGAGATTTTAACACCATAATGTCTACTGGGTTTACCCAAACTGATGTTAACTCTGCTACTTTGGTTCCTCTTTCTGACCTGGTCTGTAGCAAAACTGCATTCATGTTATCACATGGTTGGGTTTTCTTGGTGGGTTTCTCAGTTGTTGTTCTTTCACTGAGTTTCAAGATCGGAAGCTTCATGTATACGGGTAAATGA 1836 0.4406 MAIYDGPGFRFHPTDEEILCFYLKRKLTGNLPSAFDHLAVIDIYKFEPWDLPSLSKLKTRDLEWYFFTVLDKKYGNSLRLNRATDRGYWKTTGKDRIIKNAKDVVGMKKTLVYHSGRAPHGDRTNWVMHEYKMIDEALARAGMQKDTYVICRVFEKSGSGPKNGEKYGAPFIEAEWEHVGRLVDPVLLVGNELLIQEVSAPAPALVPALAPAPVLALAPAPYVGDLVDPLPTVGNKSLKQEVSASAPTDDDFVEAKDLDEEFDDTSDTVVSADLASNFCYGECSSHPVQHSQAFISAHKQMESELAFYGNQIDQPDNMADIFDLAINSVQDGYNGETIHNENPLNFNFESEYPDLYFDTCGYFMSAEEAYEETDDFKNVDEAIPIETDPSVAAAMVDEYLAFPEEDIFQHVCFDSSLNVGSEIPIANHGQPFDEQNVESETSGSSLADKHVLEAQSSNEPSFPEGDAEVSNWVSGDANYFVKQAKKFLAHMPASPAFASEFPTKEFAHGISPAAESSNSSHITTGMISITDISIRSDAMDWMVGKNGDFNTIMSTGFTQTDVNSATLVPLSDLVCSKTAFMLSHGWVFLVGFSVVVLSLSFKIGSFMYTGK 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02334 611 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 273 - -
Vifa3g02334 611 SUPERFAMILY NAC domain 6 156 IPR036093 GO:0003677|GO:0006355
Vifa3g02334 611 Gene3D NAC domain 14 159 IPR036093 GO:0003677|GO:0006355
Vifa3g02334 611 MobiDBLite consensus disorder prediction 426 445 - -
Vifa3g02334 611 Pfam No apical meristem (NAM) protein 7 132 IPR003441 GO:0003677|GO:0006355
Vifa3g02334 611 ProSiteProfiles NAC domain profile. 5 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02334 Vifa-Chr3 598157869 598161564 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02334 277 603 NAC Transcription Factor Family AT5G04410 25.575 2.43e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa3g02334 NAM 2.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02334 - - psat:127091571 959.133