Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02333 ATGGCTATCTACGACGGTCCTGGGTTCCGGTTCCACCCTACCGATGAAGAGATTCTTTGCTTCTATCTGAAACGGAAGCTCACCGGAAATTTACCATCCGCTTTCGACCATCTTGCTGTTATCGATATCTACAAGTTCGAGCCCTGGGACCTTCCCAGTTTGTCGAAGCTGAAGACTAGGGATTTGGAATGGTACTTCTTCACTGTGCTGGACAAGAAGTACGGCAATAGTTTGAGGTTGAACCGTGCTACTGATAGAGGGTATTGGAAGACTACTGGGAAGGATCGCATTATCAAGAATGCGAAGGATGTTGTTGGAATGAAGAAGACTCTTGTCTATCATTCCGGGAGGGCTCCACATGGTGACAGAACCAATTGGGTTATGCATGAATACAAGATGATTGACGAGGCCTTGGCTAGAGCTGGAATGCAGGACACTTATGTGATCTGTAGGGTATTTGAGAAGAGTGGTTCTGGGCCTAAGAATGGGGAGAAGTACGGGGCTCCTTTTATAGAGGCGGAATGGGAGCATGTCGGTAGATTGGTGGATCCCGTGCTGCTTGTTGGTAATGAGCTTTTGATCCAAGAAGTGTCTGCTCCTGCTCCAGCACTTGTACCTGCACTTGCTCCTGCTCCTGTTCTAGCACTTGCTCCTGCTCCTTATGTTGGTGACCTGGTAGATCCCTTGCCAACTGTTGGTAATAAGTCTTTGAAACAAGAAGTATCTGCTTCTGCTCCTACTGATGATGATTTTGTTGAGGCCAAAGACCTTGATGAGGAGTTTGATGATACTAGTGATACAGTTGTAAGTGCTGATTTGGCGTCAAACTTCTGTTATGGGGAGTGTAGCAGTCATCCTGTTCAGCATTCCCAAGCATTTATTAGTGCTCATAAGCAAATGGAATCTGAGCTTGCTTTTTATGGTAATCAGATTGATCAGCCTGATAATATGGCTGATATATTTGATTTGGCTATCAATTCAGTGCAAGATGGATACAATGGCGAGACAATCCATAATGAGAATCCTCTGAATTTCAATTTTGAATCTGAGTATCCTGATCTATACTTTGATACCTGTGGTTATTTTATGAGTGCTGAAGAAGCATATGAGGAAACCGATGATTTTAAGAATGTTGACGAGGCTATTCCCATTGAGACAGACCCTTCTGTTGCTGCTGCAATGGTAGACGAGTACCTTGCATTCCCTGAAGAAGATATTTTCCAACATGTATGCTTTGATTCTTCTTTGAATGTAGGGAGTGAAATCCCTATTGCCAATCATGGACAACCTTTCGATGAGCAGAATGTGGAGAGCGAAACCAGCGGTAGCTCATTGGCAGACAAACATGTTCTTGAAGCACAGTCAAGTAATGAACCTTCTTTCCCAGAGGGGGATGCAGAGGTGTCAAATTGGGTCTCAGGAGACGCAAATTACTTTGTAAAGCAAGCCAAGAAATTCCTGGCCCACATGCCTGCTTCACCTGCATTTGCTTCAGAGTTTCCTACTAAGGAGTTTGCACATGGGATATCTCCTGCAGCCGAGTCTTCCAATTCCTCTCACATAACCACAGGTATGATCAGCATTACAGACATTTCTATTAGAAGCGATGCGATGGATTGGATGGTGGGCAAGAATGGAGATTTTAACACCATAATGTCTACTGGGTTTACCCAAACTGATGTTAACTCTGCTACTTTGGTTCCTCTTTCTGACCTGGTCTGTAGCAAAACTGCATTCATGTTATCACATGGTTGGGTTTTCTTGGTGGGTTTCTCAGTTGTTGTTCTTTCACTGAGTTTCAAGATCGGAAGCTTCATGTATACGGGTAAATGA 1833 0.4408 MAIYDGPGFRFHPTDEEILCFYLKRKLTGNLPSAFDHLAVIDIYKFEPWDLPSLSKLKTRDLEWYFFTVLDKKYGNSLRLNRATDRGYWKTTGKDRIIKNAKDVVGMKKTLVYHSGRAPHGDRTNWVMHEYKMIDEALARAGMQDTYVICRVFEKSGSGPKNGEKYGAPFIEAEWEHVGRLVDPVLLVGNELLIQEVSAPAPALVPALAPAPVLALAPAPYVGDLVDPLPTVGNKSLKQEVSASAPTDDDFVEAKDLDEEFDDTSDTVVSADLASNFCYGECSSHPVQHSQAFISAHKQMESELAFYGNQIDQPDNMADIFDLAINSVQDGYNGETIHNENPLNFNFESEYPDLYFDTCGYFMSAEEAYEETDDFKNVDEAIPIETDPSVAAAMVDEYLAFPEEDIFQHVCFDSSLNVGSEIPIANHGQPFDEQNVESETSGSSLADKHVLEAQSSNEPSFPEGDAEVSNWVSGDANYFVKQAKKFLAHMPASPAFASEFPTKEFAHGISPAAESSNSSHITTGMISITDISIRSDAMDWMVGKNGDFNTIMSTGFTQTDVNSATLVPLSDLVCSKTAFMLSHGWVFLVGFSVVVLSLSFKIGSFMYTGK 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02333 610 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 272 - -
Vifa3g02333 610 SUPERFAMILY NAC domain 6 155 IPR036093 GO:0003677|GO:0006355
Vifa3g02333 610 MobiDBLite consensus disorder prediction 425 444 - -
Vifa3g02333 610 Pfam No apical meristem (NAM) protein 7 132 IPR003441 GO:0003677|GO:0006355
Vifa3g02333 610 Gene3D NAC domain 14 158 IPR036093 GO:0003677|GO:0006355
Vifa3g02333 610 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02333 Vifa-Chr3 598157869 598161564 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02333 276 602 NAC Transcription Factor Family AT5G04410 25.575 2.65e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa3g02333 NAM 2.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02333 - - psat:127091571 963.755