Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02330 ATGTCAGGAGAGGAAATTTGGCCATCTGTTGAAAAAGAATCTAGAAAATCTCTGCCTCCATTTGATAACAGTAGTGGCTACAATTCAAAAACAGGAATATATCACTCTCTTGAAAAGCTTGGCACCAAGCATGAAATTCCAACAGACCAAAACGTTAACACAGCAAGTCTTGTGCTATCACAGTTCCCACAAGCAGAACTTGCTGACGCGAAGATTGCGTTTATTGATTTAAATACTAATCATAGTGTAACCTATGGCGAGCTTCGCCGATCGGTTTACTCGCTTGCAACGGCTTTGTTCCATGGACTTGAGGTTAGAAAAGGTGATGTTGTGTTTTTATTGTCTCCAAACTCGGTTTTGTACTCGACAATATGCTTAGCCGTGTTATCTATTGGTGCAATTCTTACCACTGCGAATCCTCTCAATACGAAATCAGAAATCGCGAAACAAGTACGTGATTCGGGTGCTAAACTAGCCATCTCTACACCAGAAGAGTTACATAAACTGGTCCCAACAGGTGTTCCTACACTTCTTACCTCTGGTTCATCTGATGTAAAGTATTTATCAGTTGAAGAGTTAATAGAAGGCTGTTATGATTCACAAGAGTTGCCGTGTGTTTCTGTGGAACAATCAGATACTGCTGCTATACTTTACTCTTCAGGGACCACAGGTGTAAGCAAAGGTGTTGTTTTGACACATTCAAATCTCATAACCATAATAAAACTATTCTGCTGGTCTGCTGATGTATCAGCATCTCAAGACGATGTTTTCCTCGCCTTCATTCCAATGTTTCACATCTATGGACTCATGTTCTTTGGATTCGGGTTGTTATGTGTTGGTGCTACAACAGTTTTGATGCAGAAATACAATTTCCAAGCTATGCTTACCGCTATCGAGAAGTACAAAGTTAGTAACATACCAGCAGTGCCGCCGGTGATCCATGCATTGGTGAAACATGCAAGCAAAGATGGGTGTGATTTGTCTAGCTTAAGAAGGGTTGGTTCAGGTGCAGCACCTTTGAGTAAGGAAATGTCACAGGAGTTCAGAAAGATGTTTCCTTGGGTTGAACTAAGGACGGGGTATGGACTAACAGAAAGTTGTGGGGGAGCAAGCTTTTTTGCGTCGGATAAAGACGCTAAAGCTCATCCAGAAGCATGTGGAAAGTTGATTCCGACTTTTTGTGCAAAAGTGATGGACATTGAAACAGGGAAGCCTTTGCCTCCTAACAAGGAAGGAGAGTTATGGCTGAAAAGTGGCACTATTATGAAAGAATATCTAGGAAATATGGAGGCAACAGCTGCAACAGTTGATTCAGAAGGTTGGTTGAGAACAGGTGATCTTGGTTATATTGATGAGAACGGAGTCATCTGCATAGTTGAACGAATAAAGGAGCTAATCAAGCACAAAGGGTATCAGGTAGCTCCTGCAGAACTTGAATCTGTGCTACTAAGTCATCCTCTTATTGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGACAGGTACCAATGGCATATGTGGTGAGAAGAGCTGGTTCTCAACTCTCAGAAGACCATGTCATTCAATTTGTTGCAGGCCAGGTGGCTCCCTATAAGAAAGTGAGAAGGGTGAGTTTTATTGACAATATTCCAAGGTCAGCTGCTGGCAAGATATTGCGCAAGGATCTTGTTTCCCAAAGCAAATATGAACTTGTCTCTAAGTTATGA 1713 0.4174 MSGEEIWPSVEKESRKSLPPFDNSSGYNSKTGIYHSLEKLGTKHEIPTDQNVNTASLVLSQFPQAELADAKIAFIDLNTNHSVTYGELRRSVYSLATALFHGLEVRKGDVVFLLSPNSVLYSTICLAVLSIGAILTTANPLNTKSEIAKQVRDSGAKLAISTPEELHKLVPTGVPTLLTSGSSDVKYLSVEELIEGCYDSQELPCVSVEQSDTAAILYSSGTTGVSKGVVLTHSNLITIIKLFCWSADVSASQDDVFLAFIPMFHIYGLMFFGFGLLCVGATTVLMQKYNFQAMLTAIEKYKVSNIPAVPPVIHALVKHASKDGCDLSSLRRVGSGAAPLSKEMSQEFRKMFPWVELRTGYGLTESCGGASFFASDKDAKAHPEACGKLIPTFCAKVMDIETGKPLPPNKEGELWLKSGTIMKEYLGNMEATAATVDSEGWLRTGDLGYIDENGVICIVERIKELIKHKGYQVAPAELESVLLSHPLIVDAAVIPVEDEETGQVPMAYVVRRAGSQLSEDHVIQFVAGQVAPYKKVRRVSFIDNIPRSAAGKILRKDLVSQSKYELVSKL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02330 570 CDD 4CL 46 558 - -
Vifa3g02330 570 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Vifa3g02330 570 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 28 560 - -
Vifa3g02330 570 Gene3D - 464 566 IPR045851 -
Vifa3g02330 570 Pfam AMP-binding enzyme C-terminal domain 477 552 IPR025110 -
Vifa3g02330 570 FunFam 4-coumarate--CoA ligase 2 464 565 - -
Vifa3g02330 570 SUPERFAMILY Acetyl-CoA synthetase-like 63 561 - -
Vifa3g02330 570 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
Vifa3g02330 570 Gene3D - 42 463 IPR042099 -
Vifa3g02330 570 FunFam Long-chain-fatty-acid--CoA ligase FadD 43 463 - -
Vifa3g02330 570 Pfam AMP-binding enzyme 69 467 IPR000873 -
Vifa3g02330 570 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02330 Vifa-Chr3 595292531 595294814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02330 25 566 Monolignol Biosynthesis Gene Families AT4G05160 44.102 3.78e-152 446