Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02321 ATGACAGATTTTCAGCCTCTGCAGCAGAAGCCTGATTCTGCTGATTCTCATGCTGATTTTGAGCATGGCTTGGAGAACTTTATGCGTGGTCAGTTGGATGATTGTATGTCATTTGCTTCATGTAGCTCTTCCCGGGCACCGGAAGATGAGGACGATGAGAGTGATCAGCTAGTTCGGAGGAGAAGGAGGTCTGATCTTGAAGGGGATGATTTAGCAGAGTCGTCAGCAGCACGGAGGCGCCATTCGCGCATTTTGAGCAGATGGGCTGCCCGGCAGGCGCAGGAGATGATAACTACTATTGAAAGAAGGAATAGAGAGTCGGAGTTGATGGCGCTTGCAGGGTTACATACCGTGTCCATGTTGGACTCGTCTTTTTTGAGGGGGTCGCAGTCTCCTACTTCTGGCCAGGAGGGGACTGTAGAGAGGCCGAGTACTCAGGCATCTTCTATTCTGCAGATGTGGCGTGAGTTAGAGGATGAACATTTGTTGAGTCGGGCGCGTGAAAGGATGAGGGAGAGGTTGAGGCAGCAAAGGAGTTCCGATGCTAATACCAATGTGTCAAGTACCATGTCTGACAGTCGAGGCAGTGAGAATCGAGGGAGTTTGGGGGATGCAAGTGAGAGTGAAAATGATTATGGTACGTGGTCACATGATCAGATTGGATCAAGGAATGGACACGTGAATCGTAACGGGTCTAGCAGGGAACAATCTCCCGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTAGGGGATGGATGGAAAGTGGTATTAGTGATCATTCATCAAATGTGAGCCAGAGAAACAACAACCACAGATCAGAATGGCTTGGAGAAACAGAGCGTGAGAGGGTAAGAATTGTCAGGGAATGGGTGCAAATGACTAGCCAGCAGAGAGGTTCACGCGGGAGCCGTAGGGATGCTCAAGCAAACGAATCTGCTCAAGCTGCTCGGACCCGTGATATGGCAGCTGACCATGATGAGGGTCAGCCAGAGCATGTTCGGCGGGACATGCTGAGGTTGCGTGGAAGACAGGCTCTAGTTGATTTGCTTGTTAGGGTAGAAAGGGAAAGACAAAGAGAGCTGCAGGGCCTGTTGGAGCACCGTGCTGTTTCTGATTTTGCTCATCGCAATCGTATTCAGTCGTTGCTCAGAGGCAGATTCCTTCGAAATGAAACTGTTGAAGATGAAAGGCCTCCTTCTACAGCTGCAAGTGAATTAGTTCAGTTACGACAGCGGCACACTGTCTCTGGTATAAGGGAGGGGTTTCGTTCAAGATTAGAAAATATTGTTCGCGGTCAAGCCGACACCAATCCTGATGCCACGACAAATAGTAACAATGATGAAACAAGACATGATGAGAACCAATCAATCAATATCGTAGACGCTCAACAAGAAAATCACAACCAAGAGCAGATTAGGGGCCCAGAAACTGATGCACGTCAGTTGCCTAATCAAACAAGAACTTTGGAGAGTAGCACCAGTGAGACTATTAGTTGGCAAGAAGCTAGTAATCAAGGAGGGGATTGGCAGGAACAGATTACCGAAAATAGGGGAGAAGACTGGCAGCAGAGAATTAATGGTCCGTTTAATCAGCTCAGAGATGGAAGGGAAGCCAGTGATTGGCCACAGGAAACTCCCAGAAATTCAGCTGGAGATGACCCACATCAACAGGAAGCTCAAAGAGTTTGGCAGGACAATAACACAAGGGAAGCTGGTGGTAATTGGCCTGAAGAACCTTCTGCAGCCTCAAGGAATCGCCGTGGTGTTCCTTTTAGAAGATTCAACAGATTTCACCCTCCTGATGATGATAATGTATACAGCATGGAGCTTAGAGAGCTTCTGAGCAGGAGAAGTGTATCTAACCTTCTTCGCAGTGGTTTCCGCGAAAGTCTGGATCAACTAATACAGTCATATGTTGAAAGGCAAGGTCGTGCTCCAGTTGACTGGGATTTGCATCGAAACTTGCCCACAACGACTCCTGCCTCGCCTGAACGAGACCCTGAACAGCAGGGTGATGAACGTAATGAGGGTCAGCATGAAGCAATTAACAGGCCTTCACTAGTGTTTCCTCCTCCACCCATACCACCGCCACAACCTCTGTGGCACCAAGACTTGCACCAAACTGGATGGTCTCGTCATACCATGCATCGCTCTGAAATCGAATGGGAGATAATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAAGCCTGCATGGATATGCAACTAGAATTGCAGAGATCTGTCAGACAGGAGGTCTCTGCAGCTCTGAACCGCTCAGCTGGCGAAAATGGATTGGGTGCTGAGACATCTGATGATGGGTCTAAATGGGCGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAACCACATTGATTCGCTTTTGTACAGATGTGGACACATGTGCACATGTTCAAAATGTGCCAATGAGTTAATTCGTGGAGGAGGCAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2556 0.48 MTDFQPLQQKPDSADSHADFEHGLENFMRGQLDDCMSFASCSSSRAPEDEDDESDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGTVERPSTQASSILQMWRELEDEHLLSRARERMRERLRQQRSSDANTNVSSTMSDSRGSENRGSLGDASESENDYGTWSHDQIGSRNGHVNRNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNHRSEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAQANESAQAARTRDMAADHDEGQPEHVRRDMLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNETVEDERPPSTAASELVQLRQRHTVSGIREGFRSRLENIVRGQADTNPDATTNSNNDETRHDENQSINIVDAQQENHNQEQIRGPETDARQLPNQTRTLESSTSETISWQEASNQGGDWQEQITENRGEDWQQRINGPFNQLRDGREASDWPQETPRNSAGDDPHQQEAQRVWQDNNTREAGGNWPEEPSAASRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPVDWDLHRNLPTTTPASPERDPEQQGDERNEGQHEAINRPSLVFPPPPIPPPQPLWHQDLHQTGWSRHTMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSDDGSKWAHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02321 851 MobiDBLite consensus disorder prediction 545 562 - -
Vifa3g02321 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 780 849 IPR013083 -
Vifa3g02321 851 MobiDBLite consensus disorder prediction 481 515 - -
Vifa3g02321 851 MobiDBLite consensus disorder prediction 40 78 - -
Vifa3g02321 851 MobiDBLite consensus disorder prediction 1 22 - -
Vifa3g02321 851 MobiDBLite consensus disorder prediction 297 334 - -
Vifa3g02321 851 MobiDBLite consensus disorder prediction 431 454 - -
Vifa3g02321 851 MobiDBLite consensus disorder prediction 469 562 - -
Vifa3g02321 851 MobiDBLite consensus disorder prediction 652 681 - -
Vifa3g02321 851 MobiDBLite consensus disorder prediction 571 590 - -
Vifa3g02321 851 Coils Coil 728 748 - -
Vifa3g02321 851 MobiDBLite consensus disorder prediction 172 244 - -
Vifa3g02321 851 MobiDBLite consensus disorder prediction 125 147 - -
Vifa3g02321 851 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 851 - -
Vifa3g02321 851 MobiDBLite consensus disorder prediction 433 447 - -
Vifa3g02321 851 ProSiteProfiles Zinc finger RING-type profile. 799 838 IPR001841 -
Vifa3g02321 851 MobiDBLite consensus disorder prediction 297 318 - -
Vifa3g02321 851 MobiDBLite consensus disorder prediction 52 78 - -
Vifa3g02321 851 SUPERFAMILY RING/U-box 791 844 - -
Vifa3g02321 851 Pfam Zinc finger, C3HC4 type (RING finger) 796 843 - -
Vifa3g02321 851 CDD mRING-HC-C3HC5_NEU1 796 848 - -
Vifa3g02321 851 MobiDBLite consensus disorder prediction 179 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02321 Vifa-Chr3 591323345 591328984 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02321 799 845 C3H Transcription Factor Family AT3G06140 42.553 2.04e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02321 - - gmx:100784174 1404.04