LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g02311	ATGACAAGAATGCCAGGCTATCCTGTCGCTGATGGCGAACTATGTAATTTTACAATCACAGATCAACAACCTAGCTCTCTAGATGCTTGTGCACAATTATCTGCAGAAGAGAAACTTGCTGCAGAACAGAGTCTTTCAGTTTTTTGCAAGCCTGTAGAGTTCTACAACATTCTTCATCACCGTGCAACAGAAAGCGCAGCACCACTTTTCCTTCCGAGATGTTTTCAGTACAGGATACAGGCCAGGGACAACAAAAGGATACGAATAGCAGTTTTTCTGTCATGGAGTGATGAAGAAATTCAAAACATGTTTCCTTTTTATGTCAGTCTAGCAAGGCGTGATCCTAATAATAAAGACGCTGATTATTCTACTGTTTATCTACTTAGTCAGATAGTCACCATTCGAGGTTCATCCGACGTTGATGGGAACAGAATAATCACAGCAGAATTTAAGCTTTGTGAAGTTAATAAGTTAGCTGCGGAGGCTAATTCTGGCTCACTTTTTCTCTTGTTTTTTACCACTGAGGGGAACTCAGTTTCATCATCTAGAGTCAAAGAAAGCCTGGGGCCTTTAGATCCGACTTCTCATGAATCATTAGGTGAAAAGGACTGCTTATATGGGAAAATTTCTTTTCAATCCATTTACTTTGCTTGGAAAAATTCTCCAAATTTTCGTTGGGGACAACCAGCCCAGATTAAGACTACTCTTGATCTGCTTCCATGTGTTTTGAAGTATGACTTTGTAAATAAGGGTACAACCATCGCAATCCAAGATCTATGGAATTCTGAGATTGTGAGTATATCAAAGAGCGTTGAAATCAGAATCATTGCTGAAGAGATCAAGGCCATGGAGAAATCTTGCAACCGTAGAAATGCATTACCATCATCATCAAGATCATCATCATCTCGTGTCATTCGGTTGAGAGAAGGAAATGTGACATTTAATTACAGGTATTACAATAACAAATTACAGAGAACAGAAGTCTCTGAAAATTTCTCCTGTCCATTCTGTTTGATTAAATGGGGAAACTATAAGGGTCTAAGATGTCACTTGCTCGCATCACATGATCTTTTCAAATTTGAATTTTCGGCATCGGAAGATTGTCTGGCTGTTAATGTGTCTCTGAATTTTGACATATGGAGATTTGAGCTTGTTGGAGATGGTGTTGATCCAAAATTGCAAACTTTTTTCCTTCATGGCAAGCGAATGACACAAATAAGTCCAGAAAATGCATGTTTTGAAGTGGTCCAGGATGTAGACTCACCGACCTTAGCTAATAATGCAGACCCACCGGCCTTAGCTAATAATGCAGACCCACCGGCCTTAGCTAATAATGCAGACCCGCCGGCCTTAGCTTTGGAAGCAGACCCGCCGGCCCTAGCAATGGACGAAGACCCGCCGGTCTTAGCAATGGACGAAGACCCTCCGGTCTTAGCTATTGATGTGGACTCACCGGTTTTAGCTATGGATGTGGACTCGCCGATCTTAGCTACGGATGCAGACTCACCAATCCTAGCTACGGATGCGGACCCGACGATCTTAGCTACGGATGCAGACCCGCCGGTATTAGCTACAGATGAGGACCCGCCAGTATTAGCTATGGATGCGGACTCGCCGGTCTTAGCTACGGTTGCGGACCAGCCGGTCTTAGCTACGGTTACAGACCCACCGGTCTTAGCTACGGGTGCGGACCCGCCGGTATTAGCAATGGATGCGGACCCACCGGTCTTAGCCGTGGGTGCAGATCCACCGGTCTTAGCCGTTGATGCAGACCCGCCGGTCGTAGCCGTGGTTGCGGACCCGCCTGTCTTAGCCGTGGATGCAGACCCGCCGGTCGTAGCCGTTGTTGCGGACCCACCTGTCTTAGCCGTTGATGCGGACCAGCCTGTCCTAGCCGTGGATGCGGACCAGCCTGTCCTAGCTGTGGATGCAGACCCGCCTCTCCTAGCTAGGAATGCAGACCCACCAGTCTTAGCTATGGATGCAGACCCACTATTCTCAGAGTCTGAAACTCCTTTAGGAGATAATGAGTTTTTAAAGAAGATTGATGGAAGTTCTGCAACTATATCAGGGGATGAAAATGCAAGTATTGTGTCCAATTCCAATCCAAACCGTGTCCCACTAATATCTAAGCATGATCATGGGACTCCTGCAGGGCTACAGATTGGCAATACAAGGAAGTTACCAGTTGAACATTTTGACCCACAAAACATAGCCCGGTTGACGAAGCGGCAGTTTTATCATTCTCACAAAGCTCAGGCAATGTCACTTGAAGAAGTTCTATCAAATTATGATAGTGAGGATGATGTTGATGATGAAGTTGCAGATATTGAAGAGCGGGTGAAGCTTGATCTTCATCCTTTGAGCAAAGAAGAGAAGCAATTCATGTTGATGTGGAACTCATTTATTCGGAAGCAACGTGTGCGGGTAGATTCTCACATTCGTTGGGCATGCAAGGCTTTCTCAGTATTGCATGGCTCTGAGATTGTTAAATCCCGCGAATTAACTTGGTATTGGACAATGTTCAGGATCAAATTATATAAGTTGGGTCTTATAGATGGAAAAATCGTCAATGATTGCAGTAATATTCTCGAACAACACGTGAAGCATAATTCAAATCCTGAGATCCCAGTAGCTAATATAAACTCCATTCATTTCTCCCCTCTTAAAAATAAAAGAAATAAGAAGATAACACAGAAATGA	2703	0.4425	MTRMPGYPVADGELCNFTITDQQPSSLDACAQLSAEEKLAAEQSLSVFCKPVEFYNILHHRATESAAPLFLPRCFQYRIQARDNKRIRIAVFLSWSDEEIQNMFPFYVSLARRDPNNKDADYSTVYLLSQIVTIRGSSDVDGNRIITAEFKLCEVNKLAAEANSGSLFLLFFTTEGNSVSSSRVKESLGPLDPTSHESLGEKDCLYGKISFQSIYFAWKNSPNFRWGQPAQIKTTLDLLPCVLKYDFVNKGTTIAIQDLWNSEIVSISKSVEIRIIAEEIKAMEKSCNRRNALPSSSRSSSSRVIRLREGNVTFNYRYYNNKLQRTEVSENFSCPFCLIKWGNYKGLRCHLLASHDLFKFEFSASEDCLAVNVSLNFDIWRFELVGDGVDPKLQTFFLHGKRMTQISPENACFEVVQDVDSPTLANNADPPALANNADPPALANNADPPALALEADPPALAMDEDPPVLAMDEDPPVLAIDVDSPVLAMDVDSPILATDADSPILATDADPTILATDADPPVLATDEDPPVLAMDADSPVLATVADQPVLATVTDPPVLATGADPPVLAMDADPPVLAVGADPPVLAVDADPPVVAVVADPPVLAVDADPPVVAVVADPPVLAVDADQPVLAVDADQPVLAVDADPPLLARNADPPVLAMDADPLFSESETPLGDNEFLKKIDGSSATISGDENASIVSNSNPNRVPLISKHDHGTPAGLQIGNTRKLPVEHFDPQNIARLTKRQFYHSHKAQAMSLEEVLSNYDSEDDVDDEVADIEERVKLDLHPLSKEEKQFMLMWNSFIRKQRVRVDSHIRWACKAFSVLHGSEIVKSRELTWYWTMFRIKLYKLGLIDGKIVNDCSNILEQHVKHNSNPEIPVANINSIHFSPLKNKRNKKITQK	900

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g02311	900	PANTHER	POLYCOMB GROUP PROTEIN	32	871	-	-
	Vifa3g02311	900	Pfam	VEFS-Box of polycomb protein	728	862	IPR019135	-
	Vifa3g02311	900	CDD	VEFS-box_EMF2-like	741	867	-	-
	Vifa3g02311	900	CDD	ZnB-Zn_EMF2-like	306	380	-	-
	Vifa3g02311	900	MobiDBLite	consensus disorder prediction	424	452	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g02311	Vifa-Chr3	586487131	586515776	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g02311	720	866	C2H2 Transcription Factor Family	AT5G51230	54.054	4.12e-37	146

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g02311	-		-	psat:127098431	1320.45