Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02309 ATGGAAGATACATTTCCCAAGATGGAAATCTTTGCACAAAAGGAATTACCAACTTGTGTGCAAGAAATAGTAACAACAAAAGAATCCAAGTATTTGGAAGATACAATTATAAGAAGAGGCTCTTATTCTTTCACTTCTTCATCAATATCATCATCATCATCACAAAACTTTTTCTGGTGTGCTTCAAATTCCACTTCAATGAAACAAGAGGTAGCACCTTTAGGTCTAACCACTTCTAATGTCTTTGCCTCAGATATTAAACATGGTTTTGTTCCTTTAAATCTCTTGGAAACTCTTCCGACATTGAGCGTTAATCCAGTGTTTGATGAGACAACAGAATCTATAGATTCTTCTGATACACCGAAGTATCCGAATTTGAGTTTGTTTTTGCAGGAACCATCCATGCTATACTCATCAACATCACATATCAAAAGTAATGAAGTCATGTCAACAATCTCAAATCCAACTTATCATGTGCCCCAATTTGGCCTAACTCAACATCAACAAAAGATTGGTTATAATAAAAATATGATGGCAAATCTACAATCCAAGTCTTTCAATGAAAATTGGTTGAGTGCCACAAAGACTCAACCTTTGAAATATAGTGGAAGAGGGAAGCTTTTCAAAGGGGTGAGGCAGAGACATTGGGGGAAATGGGTTGCTGAAATTAGGCTACCAAGAAACAGGACTAGAGTTTGGTTAGGGACATTTGACACAGCTGAAGACGCTGCAATTGCATATGATACAGCAGCATATATACTAAGAGGTGAATGTGCTCAGTTGAATTTTCCTGATTTAAAGGATGTGATTCAAGCAAATTCGTTGAATGGAACAACTGCTTCACTTGTTGAGGCAAAACTTCAAGCAATATCACAACAAGGTGTTTCTTCTTCTTCTCATAGAAAGCAGGGTAATTCAGGAGCTAGATCAAATGATAAGCTTGTTGATGAGATTGAGAATAGAAAGGATGAAAGAATGAAGGAGTTGAAGGTTGGAGGTGACTCAAATGAGAGAAGCAAAAGTATGCAGAATGAGATATGCGATGTGGAAACTGTTCAGTTAAGTAGAATGCCATCTTTAGATATGGATATCATTTGGAATGAACTTCTAGTTTCTGGCTCATGA 1125 0.368 MEDTFPKMEIFAQKELPTCVQEIVTTKESKYLEDTIIRRGSYSFTSSSISSSSSQNFFWCASNSTSMKQEVAPLGLTTSNVFASDIKHGFVPLNLLETLPTLSVNPVFDETTESIDSSDTPKYPNLSLFLQEPSMLYSSTSHIKSNEVMSTISNPTYHVPQFGLTQHQQKIGYNKNMMANLQSKSFNENWLSATKTQPLKYSGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGECAQLNFPDLKDVIQANSLNGTTASLVEAKLQAISQQGVSSSSHRKQGNSGARSNDKLVDEIENRKDERMKELKVGGDSNERSKSMQNEICDVETVQLSRMPSLDMDIIWNELLVSGS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02309 374 CDD AP2 206 266 IPR001471 GO:0003700|GO:0006355
Vifa3g02309 374 Gene3D AP2/ERF domain 207 265 IPR036955 GO:0003700|GO:0006355
Vifa3g02309 374 MobiDBLite consensus disorder prediction 312 335 - -
Vifa3g02309 374 MobiDBLite consensus disorder prediction 293 310 - -
Vifa3g02309 374 MobiDBLite consensus disorder prediction 293 342 - -
Vifa3g02309 374 ProSiteProfiles AP2/ERF domain profile. 207 264 IPR001471 GO:0003700|GO:0006355
Vifa3g02309 374 SMART rav1_2 207 270 IPR001471 GO:0003700|GO:0006355
Vifa3g02309 374 Pfam AP2 domain 208 256 IPR001471 GO:0003700|GO:0006355
Vifa3g02309 374 PRINTS Ethylene responsive element binding protein signature 230 246 IPR001471 GO:0003700|GO:0006355
Vifa3g02309 374 PRINTS Ethylene responsive element binding protein signature 208 219 IPR001471 GO:0003700|GO:0006355
Vifa3g02309 374 SUPERFAMILY DNA-binding domain 207 265 IPR016177 GO:0003677
Vifa3g02309 374 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 56 369 - -
Vifa3g02309 374 FunFam Ethylene-responsive transcription factor 2 206 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02309 Vifa-Chr3 585628597 585629721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02309 1 369 AP2-EREBP Transcription Factor Family AT4G13620 38.660 2.49e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa3g02309 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02309 - - gmx:100820013 400.208