Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02307 ATGAGTAACAAAGAAGAGCTTCCCTGTGAGATTGAGAGAAGCCAAGTGCTTCCCCAATTCATGACACAACAGTTGAAACATCAAACACCATATACTAATACCACCATAGATCAAAACAATACAAAGTCATCTAATGTCGGTAACCTCTCCATGGGGCAGCCTCTTAACTCCATGAACAAGTCTAATAGGCCTATCGTCGTAACACATGTCATTCCTAATGACATTTGTTATCACGTGTTTGAGATCGCTGCTGAAGCAGACATCTCAAAAAGCCTCTTTGATTATGTTCGTCGTCGAGGGAGAGGCTTAAGCATCCTTAGTGGGAATGGGGAGGTGGCTCAAGTGACACTTCAGCAATCAACAGGAGAAATTGTAACCCTTCGTGGAAGGTTCCAGATTAATTCGATATCTGGAATAATTCCCCAGACGCCCACACAGGCAAAGGTGGAAGGTTTGATTGTTAAATTATCTGATACTAATGGACAATTGGTTGGGGGAAATGTAATCCCCCCTTTGGTGGCTTTCAGTCCCGTATTTTTGGTCTCTTATTCTTTTGCAAATATTGTATTTGAAAAAGAGACTTTTGTGGCTTATGGTAGGGATAATCAAGAAGTGGCGTGCCTCGATGAACCTGAACATGCGGCCAAAATTGGTGAGTTCCCCGGAGGACCGTATGATGCATCTGCTCTAGTGAGGTACCAGGGTCACGTTGGTCACCATTTATGGTTTGACGAGGAGAGACACCCGAAGAAAGAAATAAAGGTTGATGCACATGGCAGCAAATTGATAGGATGTGTTCCACACAGTCTCCCATTGGTGATAGAGTCTTGA 831 0.4356 MSNKEELPCEIERSQVLPQFMTQQLKHQTPYTNTTIDQNNTKSSNVGNLSMGQPLNSMNKSNRPIVVTHVIPNDICYHVFEIAAEADISKSLFDYVRRRGRGLSILSGNGEVAQVTLQQSTGEIVTLRGRFQINSISGIIPQTPTQAKVEGLIVKLSDTNGQLVGGNVIPPLVAFSPVFLVSYSFANIVFEKETFVAYGRDNQEVACLDEPEHAAKIGEFPGGPYDASALVRYQGHVGHHLWFDEERHPKKEIKVDAHGSKLIGCVPHSLPLVIES 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02307 276 ProSiteProfiles PPC domain profile profile. 72 206 IPR005175 -
Vifa3g02307 276 SUPERFAMILY AF0104/ALDC/Ptd012-like 77 193 - -
Vifa3g02307 276 CDD DUF296 78 174 IPR005175 -
Vifa3g02307 276 MobiDBLite consensus disorder prediction 29 58 - -
Vifa3g02307 276 Pfam Plants and Prokaryotes Conserved (PCC) domain 78 186 IPR005175 -
Vifa3g02307 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 43 196 IPR014476 GO:0003680
Vifa3g02307 276 Gene3D - 77 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02307 Vifa-Chr3 584449040 584452149 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02307 43 192 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 44.099 7.57e-35 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02307 - - psat:127091157 233.417