Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02299 ATGAATAATGAGGATCCTGGAATTTCAGGAAATCAATATAGAGGTACAGTGAGTGTTGGGTTTAGTGACAGAACATCTGATAAAGATGATGCAGACAATATATGTCTACAGACTGGTGAAGAATTTTCTGTCAAGTTCTTACGCGACCGGGTTGGTTTAAGAAGGTTTCCTGTCGTAACTGATGCAGAGCAGCAGCACATGCAAAACAGAATGGACTTCAATATTAATAATAATAATAATAATAATAATAATAATAATAACAATAATAATAATAACAATTATCAACCGGTTTACGAGGATCAAAAACACGCCCATGGGCTAGGGAGAACGGATTCTGATAGCAATTTGGATTTGTCAGATATTGCTTTTGCTAGAGGTTATGGTGCTGATGTTGACAACAGGGTATATCATAATAATATGAGCAGATATCAGTGTGAACATGGTGGTATCAGACAAGCATCGAGTGCATTTTCTAGACAATTATCAAGTAGGTTGTCTGACGGATGCGATCAAGTTGCCTCGGGATCAAATACTCCTCGTTCTTGCCAACCTTATGGAACTGTATTCTCAGAAGGTTCCTTCTACCAAAAGATAAAGTTTCTATGTAGTTTTGGAGGTCGAATACTGCCAAGGCCAAATGATGCGAAGCTCAGATATGTGGGGGGAGAGACACGGATTATATCGATCAGGAAAAACATCACACATGAGGAACTTACGAGGAAGACTTTTGATATTTGCAATCAAACTCACATTATCAAATACCAGCTTCCTGGAGAGGATCTTGATGCTCTTATTTCTGTTTGTTCTGATGAGGATCTTCATCATATGATTGAGGAGTATGAGGAGCTTGAAAGAGGTGGAGGCTCGCAACGACTGAGGATTTTTCTCATAGCTTCAAATGAATCAGGGAGTCCAAGTTCTAATGAACCAAGAGTCAATCAGAAAAATGATGCTGATTATCATTATGTTGTTGCTGTTAATGGTATACTAGATCCAAGTCCGCGAAAGAATCTTAGTGGACTGAATCTGGCAAGCCATGCAAGCCAGTTTACAACTGCCTCTGATTTCAACAGTCCACATTTCCATAGAGAATCATCCACATATGCATTTGCTTCAGAGGGTTTGGATTGCAGCCCAACCTCTTCAAATTTGGCAGGCATAACGCCAAAACAAAGTTCATTTGTAACATCAATGGCGGGCAAATCGTTTAATCAAGCGCCTCCTTCTCCCATTTGTGCACAGCCTAAAGATCCAAATATTTCTAATGTCCAGTTATTTACGGATCAACCCTATAATGTTGTTAATGAAAACATTATTCCCTATGTCATGGAAAAAATTCCACGCGACAACTCTTTCTATGTAGACAGTACCAGTTATGTTGATCCCATTGCATATTATAACAATCTTCCCCAAGGGCCTCCATGTGTGAACCACCATCCTAGTAATCAATATCCATTGGAGTCTGACCAAATCAGGAAGTCTAACACTGATTTCCATTTTCACAGACGAACCAATAGCAAAGAATTTGTTTGTTCTGCAATTTGTAATCAGACTGATATGAAATTTGAGAGGCCTTTAGTAAACAAAGAAGGTTTATACCATTTTAACAAGATTGTCTCTCACCCACATCAGTCATCGAGTGTACTCTCAGTATCTGGTGATAAGGATGTTTCTCAGTACAGAATGTTGCATGCACTCTTTGACTCAACACTTCTGGAGAATAGTGAGAACTACAAAGGTCACCTGCAATTTCCGCTTAATGTTGAGAGAGACAAATTGTCATCGCTGGGAACTTCAAGCTCTTTGGAAGAATGTTCAATGCAGCCAGAAGAGATAAGTGATGGGAAAGAACGTACAGTTTTACATCAAAACTGGCCGACTTTTGGAATCACTGATAGTTGCAACCGATTGTCAGAAATTGGTAAAGAGAACCTACAATGTGTGGGTAAAAGCACTGATTGGTTTGTTGAAAGAGTTGGAGCTATGCCACAACAGTTACAGTACATCTACTATCAACATGGTGCTTGCTCGTCTTCACCAGATTTACAAAGCAGTGAATGCAGTGATTCTGCTGCACCACTTATGTCGTCACAGTTAGCTAGATGCATGACAGAGCAACCAAATGGTATACCGTTCGACACAATTGCTTCTGAGTTTTCTATGAGAAGCCAAAGTTCACCTATGCATCACCAATTTGCTGTGTTAGAGACGAAAGATGGTCAACCACCTCCCCCTGGCTTTTTTGAGATACGGCCTATTGACCCCCAAACTGACACAGAATCTGTGCTACCTGTATCGTATCCAGACGTGGTTTCTTCTTCACTAAGAGAGGTTCTTGGCCCTGACGACAATCCTGCATACTACCAGAACCAAAAGGAAGAAAGCAAAGTCACTAAGAAACAATCCTATGAATACATTGATGAATTTTGCATCAACCAGGCAGAATCAGCAGCAGTTGTCAAAGAATCAATTGATTATATTTCTTCAAGTATCCAGTCATGCTTACAAGTTGTCTCAAATATAAATGAAGAGGGCAAACATACATATTCTGAAAAAGCAGGGGTAGTGTGTGTTAATCCAGAATCTGAAAGTAAGCTAGCAAAAGCTGATAGTGAAAACTTCAATAAGCCTATTGGTGATTCAGAAACTGCTGAAACAGAGTCGGAACTTTATGGTTTACAGATTATTGAGAATGGTGATCTTGAAGAACTACATGAGTTAGGATCTGGAACCTTTGGAACTGTTTATCATGGCAAATGGAGAGGAACAGATGTTGCAATTAAGAGAATAAAAAGTAGCTGTTTTGCTGGTAGAATGTCAGAGCAAGAGCGGTTGACTAAAGATTTTTGGGGGGAGGCAAAGATTCTATCAACTCTTCACCATCCAAATGTGGTGGCATTTTATGGGGTAGTTCCAGATGGCCCAGGTGGAACATTGTCAACTGTAACCGAATACATGTTGCACGGATCACTGAGAAATGTTCTCTTGAAGAAGGAGAGAGTGCTTGACCGTCGTAAAAGGATCATGATTGCAATGGACGCAGCCTTTGGCATGGAATATTTGCATTTAAAAAGTATTGTTCATTTTGATTTGAAGTGTGATAATTTGCTTGTCAACTTGGGTGATCCTGAGCGGCCTGTATGTAAGGTTGGAGATTTTGGCCTATCGAGAATTAAACGCAACACACTTGTTTCTGGTGGTGTCAGAGGGACTCTTCCATGGATGGCACCGGAACTACTGGATGGTAACAGCTGTAGAGTATCTGAGAAGGTCGATATTTTCTCATTTGGTATCACAATGTGGGAAATCTTGACTGGTGAAGAACCTTATGCTAACATGCACTGCGGTGCCATCATAGGAGGTATTGTCAATAATACGCTTAGGCCATCTATTCCGAAACGCTGTGATTCTGAGTGGAAAAAGTTGATGGAAGAATGTTGGAGCCCTGATCCTGAAGCCAGGCCAACCTTCACAGAAGTTAAAAATAGACTTCGCAACATGTCAGCTGCACTGCAGAAAAAGAGACCTAATGTCGGGATTCGGTGA 3546 0.4038 MNNEDPGISGNQYRGTVSVGFSDRTSDKDDADNICLQTGEEFSVKFLRDRVGLRRFPVVTDAEQQHMQNRMDFNINNNNNNNNNNNNNNNNNNYQPVYEDQKHAHGLGRTDSDSNLDLSDIAFARGYGADVDNRVYHNNMSRYQCEHGGIRQASSAFSRQLSSRLSDGCDQVASGSNTPRSCQPYGTVFSEGSFYQKIKFLCSFGGRILPRPNDAKLRYVGGETRIISIRKNITHEELTRKTFDICNQTHIIKYQLPGEDLDALISVCSDEDLHHMIEEYEELERGGGSQRLRIFLIASNESGSPSSNEPRVNQKNDADYHYVVAVNGILDPSPRKNLSGLNLASHASQFTTASDFNSPHFHRESSTYAFASEGLDCSPTSSNLAGITPKQSSFVTSMAGKSFNQAPPSPICAQPKDPNISNVQLFTDQPYNVVNENIIPYVMEKIPRDNSFYVDSTSYVDPIAYYNNLPQGPPCVNHHPSNQYPLESDQIRKSNTDFHFHRRTNSKEFVCSAICNQTDMKFERPLVNKEGLYHFNKIVSHPHQSSSVLSVSGDKDVSQYRMLHALFDSTLLENSENYKGHLQFPLNVERDKLSSLGTSSSLEECSMQPEEISDGKERTVLHQNWPTFGITDSCNRLSEIGKENLQCVGKSTDWFVERVGAMPQQLQYIYYQHGACSSSPDLQSSECSDSAAPLMSSQLARCMTEQPNGIPFDTIASEFSMRSQSSPMHHQFAVLETKDGQPPPPGFFEIRPIDPQTDTESVLPVSYPDVVSSSLREVLGPDDNPAYYQNQKEESKVTKKQSYEYIDEFCINQAESAAVVKESIDYISSSIQSCLQVVSNINEEGKHTYSEKAGVVCVNPESESKLAKADSENFNKPIGDSETAETESELYGLQIIENGDLEELHELGSGTFGTVYHGKWRGTDVAIKRIKSSCFAGRMSEQERLTKDFWGEAKILSTLHHPNVVAFYGVVPDGPGGTLSTVTEYMLHGSLRNVLLKKERVLDRRKRIMIAMDAAFGMEYLHLKSIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNSCRVSEKVDIFSFGITMWEILTGEEPYANMHCGAIIGGIVNNTLRPSIPKRCDSEWKKLMEECWSPDPEARPTFTEVKNRLRNMSAALQKKRPNVGIR 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02299 1181 SMART PB1_new 212 299 IPR000270 GO:0005515
Vifa3g02299 1181 ProSiteProfiles Protein kinase domain profile. 901 1171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02299 1181 Pfam PB1 domain 213 296 IPR000270 GO:0005515
Vifa3g02299 1181 PRINTS Tyrosine kinase catalytic domain signature 1091 1113 IPR001245 GO:0004672|GO:0006468
Vifa3g02299 1181 PRINTS Tyrosine kinase catalytic domain signature 983 996 IPR001245 GO:0004672|GO:0006468
Vifa3g02299 1181 PRINTS Tyrosine kinase catalytic domain signature 1020 1038 IPR001245 GO:0004672|GO:0006468
Vifa3g02299 1181 PRINTS Tyrosine kinase catalytic domain signature 1135 1157 IPR001245 GO:0004672|GO:0006468
Vifa3g02299 1181 CDD PB1_UP2 201 297 - -
Vifa3g02299 1181 ProSitePatterns Protein kinases ATP-binding region signature. 907 928 IPR017441 GO:0005524
Vifa3g02299 1181 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1026 1038 IPR008271 GO:0004672|GO:0006468
Vifa3g02299 1181 MobiDBLite consensus disorder prediction 72 97 - -
Vifa3g02299 1181 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 989 1179 - -
Vifa3g02299 1181 Gene3D Phosphorylase Kinase; domain 1 894 988 - -
Vifa3g02299 1181 SMART serkin_6 901 1170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02299 1181 SUPERFAMILY CAD & PB1 domains 214 306 - -
Vifa3g02299 1181 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 894 988 - -
Vifa3g02299 1181 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 217 299 - -
Vifa3g02299 1181 MobiDBLite consensus disorder prediction 1 22 - -
Vifa3g02299 1181 Gene3D Transferase(Phosphotransferase) domain 1 989 1178 - -
Vifa3g02299 1181 CDD STKc_MAP3K-like 907 1164 - -
Vifa3g02299 1181 MobiDBLite consensus disorder prediction 741 761 - -
Vifa3g02299 1181 Pfam Protein tyrosine and serine/threonine kinase 903 1164 IPR001245 GO:0004672|GO:0006468
Vifa3g02299 1181 Gene3D - 216 299 - -
Vifa3g02299 1181 MobiDBLite consensus disorder prediction 1 30 - -
Vifa3g02299 1181 SUPERFAMILY Protein kinase-like (PK-like) 890 1164 IPR011009 -
Vifa3g02299 1181 PANTHER SERINE-THREONINE PROTEIN KINASE 242 1165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02299 Vifa-Chr3 582105152 582110602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02299 197 345 MAP Kinase Kinase Kinase AT1G16270 56.209 3.83e-40 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vifa3g02299 PK_Tyr_Ser-Thr 3.1e-62 CL0016