Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02295 ATGGCGATGGTTCCTTGGCGTGGCATCAGTTGCTGTTTGAGTGCTGCTGCTCTTTACTTTCTCGGTAGAGCAAGTGGCAGGGATGCTGAAATTCTTAATTCTGTTAGCAGGGTTAATCAATTGAGGGAGCTAGCCAAACTCTTGGATGAGGAAATACTCCCTTTGGTTGTTGCAATTTCTGGAAGAGTTGGTTCTGAAACCCCGATTAGTTGTGAGTTTAGCGGTTTAAGAGGTGTAATAGTTGAAGAAACGGCTGAGCAACATTTTCTGAAGCACAATGAAAATGGTTCATGGATACAAGATTCTGCGTTAATGTTATCCATGAGTAAAGAGGTTCCTTGGTATCTGGGTGATGGAACTGATCGTGTGCGTGTAGTCGGAGCTCGCGGTGCCACTGGTTTTGTATTGCCTGTTGGAAGTGAGGCATTTGAAGAGTCGGGTCGGTCAATTGTACGTGGAACATTGGATTATCTCCAAGGTCTAAAGATGCTTGGAGTTAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGGCTGCTAAAGACGACGTCGGAACCATTCGAATTCAGCGACCCACCAAAGGGCCATTTTATGTCTCTCCCAAAACAATTGATGAACTTATTGCAAATCTTGGGAAATGGGCGAGGTGGTATAAGTGCGCTTCTATGGGCTTGACATTGTTTGGTGTATATCTAATAGCTAATCATGCTATCCGGTACATCATGGAAAGACGCCATCGCAACGAAATACAAAAAAGGGTTCTTGCTGCAGCTGCTAAGATGTCTGGACAAGATAATGGAGGTGAAATTGCTGACAACTTAGATGGTGCTAAAAGGGAACGCTCAATGCCAGATTTGTGTGTAATATGCCTCGAGCAGGAATATAATTCCGTTTTTGTTCCGTGTGGGCATATGTGCTGCTGTACAGCTTGCTCATCGCACTTGACCAGTTGCCCTCTTTGCCGGAGACAGATAGAAAGGGCAGTAAAGACATTCCGTCATTGA 1023 0.4477 MAMVPWRGISCCLSAAALYFLGRASGRDAEILNSVSRVNQLRELAKLLDEEILPLVVAISGRVGSETPISCEFSGLRGVIVEETAEQHFLKHNENGSWIQDSALMLSMSKEVPWYLGDGTDRVRVVGARGATGFVLPVGSEAFEESGRSIVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDVGTIRIQRPTKGPFYVSPKTIDELIANLGKWARWYKCASMGLTLFGVYLIANHAIRYIMERRHRNEIQKRVLAAAAKMSGQDNGGEIADNLDGAKRERSMPDLCVICLEQEYNSVFVPCGHMCCCTACSSHLTSCPLCRRQIERAVKTFRH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02295 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 339 IPR013083 -
Vifa3g02295 340 FunFam Baculoviral IAP repeat containing 7 302 338 - -
Vifa3g02295 340 FunFam E3 ubiquitin-protein ligase SP1 281 339 - -
Vifa3g02295 340 ProSiteProfiles Zinc finger RING-type profile. 293 328 IPR001841 -
Vifa3g02295 340 Pfam E3 Ubiquitin ligase 86 235 IPR022170 GO:0004842|GO:0006996|GO:0016567
Vifa3g02295 340 PANTHER - 3 307 IPR044231 GO:0004842|GO:0016567
Vifa3g02295 340 SUPERFAMILY RING/U-box 292 333 - -
Vifa3g02295 340 Pfam Zinc finger, C3HC4 type (RING finger) 291 333 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02295 3 274 C3H Transcription Factor Family AT1G63900 72.628 6.42e-147 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02295 K15688 - gmx:100803252 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02295 3 580655273 580658334 Vifa3g02295 3 580655273 580658334 ECH