Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02277 ATGAACATCTTCATCCTCCTCTTCTCCACCTTACTAACCACTCTCCCTCACCCTTCTCTCTCCGCCACCGCCACCGCCACCGCCACGTGTCCTCTCAACTTCACCCTCCTAACAAACCTCACCGGCGCCGCCACAACACCACCCTCTTCCTTCACTTCAACACCCTGCCAATTCGTTCACCAGGCCCTCCGCCTCGTCCAATCCGACTACCTCCGCCGCACCGACTTCTTCCTCCCTCCCTTAAACACCTCCGTCCCATGCTGGACCTCTTTCCAATCCTACATCAACCAATTCGCACCAAATTTCAACATTCGTTCCTCTTGCGGCTTCCAAACCAATTGGATCTCACAAGGCTGCACCAACGTCACCACAAGAAAACAATTCGAATCAATCGTTCCTCAATCCGCAATTCTCAACATGCAGTCAAATTGTAACCAATCACTTGAAGATAATTCTCCTTGTGCTCTTTGTACTACTAGTTTATCTGGTTTGCCTCCTCTTGGTCAATCCATCGGTAACCTCTCTGATTGCACTGGCTTCCCTTCAATCTACGCTGCTGCTTTTTCAAATCAATTTGGACCGTCTGATCCCGGTACTGCTAAGTGTTTATTTGCACTTGATTTCACCTCTGGAGGTTCCTCTGGTAATAAGAAAAAGGTTGTTGTTATTGTTGTTGTTTCAGTTGTTTCTCTTTTGGTTCTTTTGTTGATAGTTATAGGGGTTTGGGCTTATTCGAAATTTAATGATAAGACAATTGGAGATGCTATGGATCATGGTGTTAATATCGGTGAACCCGTTTCTGGGTTGGATACAATGGATCATAGTACTACTTTGATTAGATTCAGTGTTGACGATATTAAGAAGGCAACCAAGAATTTTCATAGAGATAATATAATTGGGAAAGGGGGTTATGGAAATGTGTATAAAGGACTATTGTCTGATGGAAGTGAAGTTGCTTTCAAGAGGTTTAAGAATTGTTCTGCTGCTGGTGATGCTAGTTTTACTCACGAGGTTCAAGTTATTGCTAGTGTTAGGCATGTGAATCTTGTTGCTTTGAGAGGTTATTGTAGTGCGACGACGCGTTTAGAGGGTTATCAGAGGATTATTGTTTGTGATTTGATGAAAAATGGGAGTCTTCATGATCATTTGTTTGGTTCTGTTGGGGCGAAACTTACTTGGCCAGCTCGTCAGAAGATTGCTCTTGGAACTGCTAGGGGATTAGCTTATTTGCATTACGGAGCTCAACCTGCTATCATTCATAGGGATATTAAAGCGAATAATATACTTTTGGATGATAAGTTTGAAGCTAAGGTCGCTGATTTTGGACTTGCGAAGTTTAATCCTGAAGGAATGACTCATATGAGTACAAGGGTGGCTGGAACTATGGGATATGTTGCTCCTGAGTATGCTTTGTATGGACAATTAACAGAAAGGAGTGATGTGTTTAGTTTTGGTATTGTGCTTCTTGAGCTATTGAGTGGACGAAAGGCTCTTCAAACGGATGATGATGGACAACCTTCTGCTTTGACTGATTGGGCTTGGTCGTTGGTTAGAACGGGAAAGGCGTTGGATGTTATTGAAGATGGGATGCCCGAACAAGGTTCGAATCAAGTTCTTGAGAAGTATGTGTTGATTGCTGTGCTTTGTTCTCATCCACAGTTATATGCTAGGCCAACAATGGATCAGGTTGTTAAAATGATGGAGACTGATGATGAAATAGTTCCATCGATACCTGGACGGCCGATTCCTCTTGTTGCTGCGAGACTTGATATTGAGAGATCTATAAGCAGTAGCGGCGGCTCCGGTCAGCTATCCAGTCCAACAGGTTATCAATCGTTCACTTTAGAAATGGGAAGTGAACGCTATTCTTCTAGTCATTTAAGGGAAGAAAGAAGTTCTGCCTCTAGGATTTTGAGTTCGGATTTGGATGAGTGA 1935 0.4336 MNIFILLFSTLLTTLPHPSLSATATATATCPLNFTLLTNLTGAATTPPSSFTSTPCQFVHQALRLVQSDYLRRTDFFLPPLNTSVPCWTSFQSYINQFAPNFNIRSSCGFQTNWISQGCTNVTTRKQFESIVPQSAILNMQSNCNQSLEDNSPCALCTTSLSGLPPLGQSIGNLSDCTGFPSIYAAAFSNQFGPSDPGTAKCLFALDFTSGGSSGNKKKVVVIVVVSVVSLLVLLLIVIGVWAYSKFNDKTIGDAMDHGVNIGEPVSGLDTMDHSTTLIRFSVDDIKKATKNFHRDNIIGKGGYGNVYKGLLSDGSEVAFKRFKNCSAAGDASFTHEVQVIASVRHVNLVALRGYCSATTRLEGYQRIIVCDLMKNGSLHDHLFGSVGAKLTWPARQKIALGTARGLAYLHYGAQPAIIHRDIKANNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGIVLLELLSGRKALQTDDDGQPSALTDWAWSLVRTGKALDVIEDGMPEQGSNQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETDDEIVPSIPGRPIPLVAARLDIERSISSSGGSGQLSSPTGYQSFTLEMGSERYSSSHLREERSSASRILSSDLDE 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02277 644 CDD STKc_IRAK 299 568 - -
Vifa3g02277 644 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 65 619 - -
Vifa3g02277 644 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Vifa3g02277 644 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 374 575 - -
Vifa3g02277 644 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 258 372 - -
Vifa3g02277 644 ProSiteProfiles Protein kinase domain profile. 293 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02277 644 MobiDBLite consensus disorder prediction 621 644 - -
Vifa3g02277 644 SMART serkin_6 293 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02277 644 MobiDBLite consensus disorder prediction 622 644 - -
Vifa3g02277 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Vifa3g02277 644 Gene3D Transferase(Phosphotransferase) domain 1 374 574 - -
Vifa3g02277 644 Pfam SPARK 26 163 IPR043891 -
Vifa3g02277 644 Pfam Protein kinase domain 293 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02277 644 SUPERFAMILY Protein kinase-like (PK-like) 270 568 IPR011009 -
Vifa3g02277 644 Gene3D Phosphorylase Kinase; domain 1 266 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02277 Vifa-Chr3 575770887 575772821 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02277 21 615 Receptor kinase-like Gene Family AT2G48010 63.712 0.0 774
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vifa3g02277 Pkinase 8.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02277 - - gmx:100800760 900.968