Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02275 ATGGCGAAGGAAAAGGTGGATTCACCTGTTACAGTTCTTGAGGACTATTTCAAAAGTTCAGATTCAGAAACAAGTTCTTCCAAAGAACCTACTTTCGATTCTGATGAAATTTCAAAACCTCTTTCAAGGTGGCATTCGTTTCGTCAATTGCTCAAAACAGGTACAAAGAAACAGTTACCAACATTGCAGCCACCTCTTCATGGACAACTCTCAAGAAGACTTAGCAGAAGCATGAGGGATACTATTCTTCCAAGTTGTCTCACTCTCTCCAATGCAACTTCAACCCCTTGTAGATCACCATGGAAGATATTTTCTCATCATGATATACAACTTGCAACCAACTATTTTAGCCAAGAAAATTTGATTGGAAAAGGTGGATATGCTGAGGTTTACAAAGGGTGTTTACCAAATCATCGGTTAGTAGCAATCAAAAGGTTAACAAGAGGAACTGCGGATGAAATTATAGGAGATTTTTTATCAGAACTTGGTGTAATGGCGCATGTTAACCATCCCAATACTGCTAAGCTTGTTGGCTATGGAGTGGATGGAGGAATGTATCTAGTTCTTGAATTGTCTGAAAAAGGAAGTCTAGCTTCCGTGCTATATGGTTCCAAGGAGAAAGTACCATGGTGTATTAGGCACAAAATTGCATTAGGAACAGCCAGTGGTATATTATATCTTCATGAGGGTTGTCAAAAAAGATTCATCCATAGAGATATAAAAGCTGCCAATATCTTGCTCACAGAAGATTTTGAGCCTCAGATTTGTGATTTCGGGCTAGCAAAATGGCTGCCAGAGAATTGGACTCACCATAACGTTTCAAAATTTGAAGGAACTTTTGGTTACCTTGCTCCTGAGTACTTGCTTCATGGCATAGTAGATGAGAAAACAGATGTATTTGCCTTTGGTGTATTGCTCTTAGAATTGGTCAGTGGGAGAAGAGCCCTTGATTATTCCCAACAAAGCCTTGTTTTGTGGGCAAAACCTTTGTTGAAAAAGAATGATATTATGGAGCTGATAGATCCTTCACTAGCAGGTGAATTCGAGTATAGGCAGATGAATCTTATGCTCTTGACAGCTTCTTTATGCATACAACAGTCCTCCATTCGTCGTCCCTCTATGAGACAGGTTGTGCAACTTCTGAATGGAAACCTTAGTTGCTTCAAGACCATGAAGAAAACTCGATTGCCATTCTTTCGAAGAGTCTTTCGGGAAGAGCTTCTTGATTCTGATTAG 1236 0.3964 MAKEKVDSPVTVLEDYFKSSDSETSSSKEPTFDSDEISKPLSRWHSFRQLLKTGTKKQLPTLQPPLHGQLSRRLSRSMRDTILPSCLTLSNATSTPCRSPWKIFSHHDIQLATNYFSQENLIGKGGYAEVYKGCLPNHRLVAIKRLTRGTADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKVPWCIRHKIALGTASGILYLHEGCQKRFIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHNVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIMELIDPSLAGEFEYRQMNLMLLTASLCIQQSSIRRPSMRQVVQLLNGNLSCFKTMKKTRLPFFRRVFREELLDSD 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02275 411 Gene3D Transferase(Phosphotransferase) domain 1 193 395 - -
Vifa3g02275 411 SMART serkin_6 116 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02275 411 MobiDBLite consensus disorder prediction 18 37 - -
Vifa3g02275 411 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Vifa3g02275 411 Gene3D Phosphorylase Kinase; domain 1 86 190 - -
Vifa3g02275 411 SUPERFAMILY Protein kinase-like (PK-like) 93 381 IPR011009 -
Vifa3g02275 411 Pfam Protein kinase domain 117 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02275 411 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 193 395 - -
Vifa3g02275 411 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 87 190 - -
Vifa3g02275 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Vifa3g02275 411 ProSiteProfiles Protein kinase domain profile. 116 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02275 411 PANTHER OS08G0249100 PROTEIN 7 409 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02275 Vifa-Chr3 575050936 575053389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02275 103 377 Trihelix Transcription Factor Family AT1G68690 41.608 5.79e-66 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vifa3g02275 Pkinase 4.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02275 - - gmx:100780587 707.983