Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02263 ATGGGTTCGAAACCGTGGCTACATCCTGCTCCAACTTATAGTCCTATAGAAAGTTTTTGGGATACTGATGAAGATGCGCCTGGTCCTCGCTGTGGACATACTCTCACTGCTGTGGCTGCTACTAAGTCGCATGGTCCGCGCTTGATTCTGTTTGGTGGTGCAACTGCCATTGAAGGAGGATCCACTTCTGCTCCTGGCATTAGATTAGCTGGAGTTACGAATTCGGTTCATTCGTATGACGTTGACACAAAGAAATGGACTAGGATTAAACCGGCTGGAGACCCGCCCTCTCCTCGGGCTGCTCATGCTGCTGCCACAGTTGGCACCATGGTTGTTTTTCAGGGGGGGATAGGTCCTGCCGGACATTCCACCGATGATCTTTATGTGCTCGACTTGACCAATGATAAATACAAATGGCACAGAGTCGTTGTACAAGGGCAGGGACCGGGGCCTCGCTACGGCCATGTAATGGACTTGGTTGCTCAGAGATATCTTGTTACCGTCAGCGGAAATGATGGAAAACGAGTTGTATCTGATGCTTGGGCTTTAGATACGGCTCAGAAGCCATATGCATGGCAGAAGCTGAACCCAGAAGGTGACAGGCCTTCTGCTAGAATGTATGCAACTGCTAGTGCCCGCTCAGATGGAATGTTTTTACTCTGTGGTGGAAGAGACTCTTCAGGAACTCCACTAGCAGACGCCTATGGACTGCTCATGCATAGGAATGGCCAGTGGGAATGGACTCTTGCACCTGGAGTTTCCCCTTCACCTAGGTATCAACATGCATCGGTTTTTGTTGGTGCACGGTTACATGTTACAGGAGGTGTTCTTAGGGGTGGGCGAGCTGTGGAAGGTGAAGCATCCATTGCAGTATTGGACACTGCTGCTGGGGTTTGGTTGGATCGAAATGGCATAGTGTCCTCGTCACGCTCAAACAAAGGTCATGATTATGACCCTTCTCTGGAGCTTATGCGACGTTGTCGCCATGCAGCAGCAGCTGTTGGTGTTCGAGTCTATATTCATGGTGGTCTTAGAGGAGATACACTACTGGGTGATTTCTTAGTGGCTGAAAATTCGCCATCAGGTTCACCTTTTGATAGTCCCAAACTTAATCAGTCTAACTTAAATTATAACGGAGAAACACCAAGTTCGGATGGTGGACCAGAAACCCCAACATTTGGTGGCGGAGGCTTGGACAAATATTCTCTGGAGAAACTGAGGGAGGCATCAGCTGCTGAAGCTGAGGCAGCTAGTGCTGTCTGGCAATCTGTGCAAGCTATTTCAAGTAGTCCTGCTGATGAAACATTTGTGTCAGATGACAACTCACATGCTGCAGACACCGTTGCAGATGGAAGTGACACAGAGGGAGATGTTCACCTTCATCCTAGAGCTGTTGTAGTTGCTAAAGAGGCTATAGGTAACCTTGGTGGAATGGTGAGACAATTGTCACTCGATCAATTTGAAAATGAAAGCAGACGCATGCTTCCCATAAACAGTGATTCGCCATTTCCTACAAAAAAGATCACCAGGCAGAAATCCCCTCAGGGTTTACATAAAAAGATAATTTCAAATTTGCTCAGGCCTCGCAACTGGAAAGCACCTGCTAATAGGCGGTTCTTCTTGGATTCTTATGAAGTGGGTGAGCTTTGCTATGCTGCTGAGCAAATATTTATGCATGAACCAACTGTTCTTCAGCTGAAAGCTCCTGTCAAAGTATTTGGTGATCTTCATGGTCAGTTTGGTGATTTGATGCGGCTATTTGATGAATATGGATTTCCTTCAACCGCAGGAGACATCACGTATATTGACTACCTGTTTTTAGGAGATTATGTTGATCGAGGACAGCACAGCTTGGAAACCATTACCTTGCTACTTGCTCTTAAGATTGAATATCCCGACAATGTTCACTTGATACGTGGAAATCATGAAGCTGCTGACATAAATGCATTATTTGGTTTTCGTATAGAGTGCATTGAACGAATGGGTGAAAATGACGGCATATGGGCGTGGACAAGATTCAATCAACTTTTTAACCATCTCCCACTCGCTGCTCTTATTGAAAAGAAAATTATATGTATGCATGGTGGCATTGGAAGATCTATCCATTCAGTAGAACAAATAGAGAAGATTGAAAGGCCCATAACAATGGATGCAGGATCTATTATTTTAATGGATCTTTTATGGTCTGATCCCACAGAAAATGATAGTGTGGAGGGTTTGAGACCAAATGCTAGAGGGCCAGGGCTCGTCACTTTCGGGCCTGACCGTGTCACTGAGTTCTGTAAGAAAAATAAATTACAGCTCATCATAAGGGCCCATGAGTGTGTGATGGACGGTTTTGAGCGATTTGCCCAGGGACAACTAATCACACTTTTTTCTGCAACTAACTATTGTGGAACTGCAAACAATGCGGGAGCTATACTGGTGGTTGGCAGGGGTTTGGTTGTGGTTCCAAAATTAATTCATCCTATACCACCTCCTCTTCAGTCACCAGAGTCATCTCCTGAGCGTGTCATGGACGAGACATGGATGCAGGAGCTTAATATTCAGAGGCCACCAACTCCTACTCGTGGTCGACCACAGCCTGACCTTGACCGTGGTTCCCTAGCGTATATATGA 2619 0.4612 MGSKPWLHPAPTYSPIESFWDTDEDAPGPRCGHTLTAVAATKSHGPRLILFGGATAIEGGSTSAPGIRLAGVTNSVHSYDVDTKKWTRIKPAGDPPSPRAAHAAATVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKYKWHRVVVQGQGPGPRYGHVMDLVAQRYLVTVSGNDGKRVVSDAWALDTAQKPYAWQKLNPEGDRPSARMYATASARSDGMFLLCGGRDSSGTPLADAYGLLMHRNGQWEWTLAPGVSPSPRYQHASVFVGARLHVTGGVLRGGRAVEGEASIAVLDTAAGVWLDRNGIVSSSRSNKGHDYDPSLELMRRCRHAAAAVGVRVYIHGGLRGDTLLGDFLVAENSPSGSPFDSPKLNQSNLNYNGETPSSDGGPETPTFGGGGLDKYSLEKLREASAAEAEAASAVWQSVQAISSSPADETFVSDDNSHAADTVADGSDTEGDVHLHPRAVVVAKEAIGNLGGMVRQLSLDQFENESRRMLPINSDSPFPTKKITRQKSPQGLHKKIISNLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMHEPTVLQLKAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPDNVHLIRGNHEAADINALFGFRIECIERMGENDGIWAWTRFNQLFNHLPLAALIEKKIICMHGGIGRSIHSVEQIEKIERPITMDAGSIILMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVTEFCKKNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPIPPPLQSPESSPERVMDETWMQELNIQRPPTPTRGRPQPDLDRGSLAYI 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02263 872 SMART pp2a_7 541 825 IPR006186 GO:0016787
Vifa3g02263 872 SUPERFAMILY Kelch motif 70 356 IPR015915 GO:0005515
Vifa3g02263 872 FunFam Serine/threonine-protein phosphatase 9 192 - -
Vifa3g02263 872 MobiDBLite consensus disorder prediction 360 399 - -
Vifa3g02263 872 FunFam Serine/threonine-protein phosphatase 506 845 - -
Vifa3g02263 872 SUPERFAMILY Metallo-dependent phosphatases 522 832 IPR029052 -
Vifa3g02263 872 MobiDBLite consensus disorder prediction 432 448 - -
Vifa3g02263 872 MobiDBLite consensus disorder prediction 847 872 - -
Vifa3g02263 872 Gene3D - 4 193 IPR015915 GO:0005515
Vifa3g02263 872 Gene3D - 502 842 IPR029052 -
Vifa3g02263 872 ProSitePatterns Serine/threonine specific protein phosphatases signature. 638 643 IPR006186 GO:0016787
Vifa3g02263 872 PRINTS Serine/threonine phosphatase family signature 604 631 IPR006186 GO:0016787
Vifa3g02263 872 PRINTS Serine/threonine phosphatase family signature 675 701 IPR006186 GO:0016787
Vifa3g02263 872 PRINTS Serine/threonine phosphatase family signature 569 596 IPR006186 GO:0016787
Vifa3g02263 872 PRINTS Serine/threonine phosphatase family signature 637 661 IPR006186 GO:0016787
Vifa3g02263 872 PRINTS Serine/threonine phosphatase family signature 705 732 IPR006186 GO:0016787
Vifa3g02263 872 PRINTS Serine/threonine phosphatase family signature 765 785 IPR006186 GO:0016787
Vifa3g02263 872 PRINTS Serine/threonine phosphatase family signature 787 803 IPR006186 GO:0016787
Vifa3g02263 872 MobiDBLite consensus disorder prediction 360 388 - -
Vifa3g02263 872 PIRSF STPPP_BSU1 1 872 IPR012391 GO:0004721|GO:0009742
Vifa3g02263 872 Pfam Serine-threonine protein phosphatase N-terminal domain 520 567 IPR031675 -
Vifa3g02263 872 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 397 872 - -
Vifa3g02263 872 Pfam Calcineurin-like phosphoesterase 569 776 IPR004843 GO:0016787
Vifa3g02263 872 Pfam Galactose oxidase, central domain 115 155 - -
Vifa3g02263 872 Pfam Galactose oxidase, central domain 45 105 - -
Vifa3g02263 872 Gene3D - 194 362 IPR015915 GO:0005515
Vifa3g02263 872 MobiDBLite consensus disorder prediction 432 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02263 Vifa-Chr3 569859414 569870577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02263 570 768 Calmodulin-binding Proteins AT5G63870 33.043 5.12e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02263 K01090 - gmx:100805538 1596.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02263 3 569859414 569870577 Vifa3g02263 3 569859414 569870577 ECH