Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02256 ATGTCTTTTAGGAGTATGATTATGGATAGGAAGGGATTTGAGATGAAATTTGGGTATGGTATGAGATCAAAATCACAGTCACACTGTGATGTTGATGTTACCGATAGTTCTTTGGTGGTTGATGGATTGAAGCAGAGTTGTTGGGCTAACATGCCTTCTGAGCTTTTGAGAGATGTGCTTATGAGAATTGAAACTTCGGATGATGCTTGGCCGGCCCGTAAAAATGTTGTTGCATGCGCTGGTGTTTGTCGGAGTTGGAGAGAACTCATGAGGGAAATTGTCAAACCTCCTCAAATATCCAGCAAGTTGACATTCCCTATCTCCTTGAAGCAGCCTGGTCCAAGGGACTCTCTCATTCAGTGCTATATCAAACGAAATCGTAACAGCCAAACATATTATCTTTTTCTATGTTTAAACCAAGCCTCAACTGATGACGGCAAGTTCCTTCTTTCTGCACGCAAGTGTCGGCGTGCAACCCACACCGACTATATCATTTCTCTAAACCTTGATGATGTATCAAGAGGGAGTAGCACCTACGTTGGGAAATTGAGATCAAACTTTCTGGGCACCAAATTTACCGTGTATGATGCACACCCTCCAATTTATGGAGCCAAAGTTGCAAAGTCTCGTTCCACCAAGCTAGTTAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCTGGCAACTATCCCTTCGTGCATGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGACCTAGGATAATGCAATGTGTTATGGATTCCATCCCTGCCACAGCTGTTGAACCTGGAGGCGAGGCCCCGACACAGACACATTTTCTTCACAGCAGAAATGATACTTCTCCATCTATTCCATTCTTCAGATCAAAATCAACCCGCACAGAGAATCTTCAATCCGTAGTACCTTTGACTAGTCAAGATGATGGAATGCTGGTGTTAAGAAACAAGGCTCCTAGGTGGCACGAACAACTCCAATGCTGGTGTTTGAACTTCAACGGACGTGTGACAGTTGCCTCAGTTAAAAATTTCCAACTGGTCGCTTCTCCTAGAAATGGAGTTTCTGAGCAGGCCCAAGAAAATGTTATTCTACAGTTTGGAAAAGTTGGAAAGGATGTATTCACCATGGATTACCAGTATCCAATCTCCGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTCGACACCAAGATTGCTTGCGAATGA 1206 0.4378 MSFRSMIMDRKGFEMKFGYGMRSKSQSHCDVDVTDSSLVVDGLKQSCWANMPSELLRDVLMRIETSDDAWPARKNVVACAGVCRSWRELMREIVKPPQISSKLTFPISLKQPGPRDSLIQCYIKRNRNSQTYYLFLCLNQASTDDGKFLLSARKCRRATHTDYIISLNLDDVSRGSSTYVGKLRSNFLGTKFTVYDAHPPIYGAKVAKSRSTKLVSLKQVSPRVPAGNYPFVHVSYDLNVLGSRGPRIMQCVMDSIPATAVEPGGEAPTQTHFLHSRNDTSPSIPFFRSKSTRTENLQSVVPLTSQDDGMLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPRNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02256 401 CDD F-box_AtTLP-like 48 92 - -
Vifa3g02256 401 ProSitePatterns Tub family signature 2. 386 401 IPR018066 -
Vifa3g02256 401 Pfam F-box domain 48 94 IPR001810 GO:0005515
Vifa3g02256 401 Gene3D Tubby Protein; Chain A 105 401 IPR025659 -
Vifa3g02256 401 SUPERFAMILY F-box domain 39 91 IPR036047 GO:0005515
Vifa3g02256 401 SUPERFAMILY Tubby C-terminal domain-like 97 401 IPR025659 -
Vifa3g02256 401 Pfam Tub family 109 396 IPR000007 -
Vifa3g02256 401 PRINTS Tubby superfamily signature 358 377 IPR000007 -
Vifa3g02256 401 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Vifa3g02256 401 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Vifa3g02256 401 PRINTS Tubby superfamily signature 379 401 IPR000007 -
Vifa3g02256 401 PRINTS Tubby superfamily signature 228 255 IPR000007 -
Vifa3g02256 401 PRINTS Tubby superfamily signature 331 347 IPR000007 -
Vifa3g02256 401 PRINTS Tubby superfamily signature 313 330 IPR000007 -
Vifa3g02256 401 FunFam Tubby-like F-box protein 105 401 - -
Vifa3g02256 401 PANTHER TUBBY-RELATED 41 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02256 Vifa-Chr3 566318928 566321957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02256 1 401 TUB Transcription Factor Family AT2G47900 71.359 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vifa3g02256 Tub 3e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02256 K19600 - gmx:100809257 712.605