Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02241 ATGCTAGAAGTATTACTGGAGCATTTCAAAACCAATGATCCACAAAACTCCAGGGTGATTATTTTCTCCAATTTCAGAGAAAGTGTCAGGGACATAATGGTTGCAATTGGAGGTATCGGGGATCAAATTAGAGCTACCGAGTTTATTGGTCAAAGTTCAGGAAAAACAACGAAAGGTCAGTCCCAGAAAGTTCAACAGGCCGTGCTTAAGAAATTTCGGTCTGGTGCCTACAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGAGGAGAACCGGAAGAAAACATGATGGCCGAGTTGTAGTTTTGGCTTTTGAAGGGGCAGAGTTGAAAGGCTACTTGAAAAAAAAGGCAAAGAGCAAGACTATAACTAAACACATGCGAAATGGGGGCATAAATAGCTTTGTCTTTCATCCCAGTCCAAGGATGATTCCCCACATCTTTAAACCTGAAGTTCAATATGTTGAACTGTCTATTGAGAAATTTATTCCTCGTCAGAATAATGTGAGAGAAAACCATCTTCAAACTTCTGCATCCAAAGACGAACTCACTCTTGCTGAAACTTATTTACTCGGAAAATATTTTCACTCTACTGGAGAAAATAGATGTAGATTGTCTCTTATCGCCTTCCCTCACTCTCAGACATTTCCTTCTAGAGTTCATAAAGTGAAGCATTCCTGTGGAACATGGATGTTTATAGACATGATGCAACGTTTGCAAGGACTGGCAGCATGTGCAGGAAATAACGAAAATTCTACTCTTCAGGAAGGAAGGTGTTTAGAAAATAGTAAGCCACTTGTCAGTATTGAACTTGATGAAGCTAAAAATGACAATAGGGATAAAATGGGAAGAAATATAGATTCTGAAAATTGTCTGAAGGTGGATTCCTGTCATATGAAAATTGAAGACTTTGTTGATCTAACTCTACAAGATAATACTTTCTGTGACACGGGTGAGTGTCAAGAGGAAACAGCTGATGGTGATGAGACAATTCCTGAGACTCCAGATGCTAAGAGGAATTTGTCAAATGAAGGAGCTATTGCCACTGAAATAGCAAATTTTGTTGAGAAACAGACTTCTTCACTGGCTGTAGATGCATGCGATAACGGCATGAGAGATGAAGAGCTTAGCCCTCGTTTAACTAATTTGATTATAAGTGGTGTTGTTCCCGAGTCTCCCATTGAGGAAAGAGGGAAGTCAAGAAACAAGGAAACTAAAAACGTCATCATTGATAATGACAACGGTAAAAATGTATGTACCTCCCCTGTTAATGAAACCCAAACCCCTTTGCTTGAGCTGAAGAATTGTGTGATTAGAAGAGAACGAGTCTTTGTTTCTCAAATTGAGGAAAGGCATATGCATATTGTTGATCCAAGCATCAATGAAGAATCACATCCAAGCTGTGGTGAAATGTCTAAAGCATATATAGAGCCTGTAGAGTTTGCTGGATCAGGTTTGCTTGCAATTGCATTTGTTAGCATGTCTTTTGCAGATCATGGGATACAAAGATTAGCTTATGACACACTTGTTATATTTAAGAATGTATTAGAGAAATGCCAAAAGATGGAAGGAATGGTTACAGATTTGACGCTGGCAAAGGAGAATCAAACAAGCTTTGAGGAATATTTAAGCAATAATCCTAATGTAGACCCTGGAATTGACTTGACAGTTACCATTCTGACCACTGGTTTTTGGCCTAGTTACAAATATTTTAACCTCAATCTCCCTGCAGAGATGGTTAAGTGTGTAGAAGTTTTCAAGGAATTTTATCAAACAAAAACTAAGCACAGAAAGCTAACTTGGATTTATTCCCTGGGTACTTATAATGCAAGTGGGAAATTTGAACCAAAAACTATGGAGCTAGTTGTGACGACGTACCAGGCTTTGGCACTGCTTCTTTTCAATTCCACAGATAAGTGGAGTTATTCTGAGATAATGACTCAGTTGAAGTTGACCGATGATGATGTGCCACAAAGGCAACACTCTGCGGTTCGTGATGAGAGAAATTCGGACACTCCCGTACTAGAGGATTATAGAAGTAGATTTTCTTCTCCATCAAGAATGTTCTCTCTTGCAAATGCATCACCATTTCAAAGTAGAGATATGGTAATAAACAGAGAATTCAGTTACCAAAACGAAATGAATCCAAGCAGCAGTATTAGTGGCAGGAATGAATCCATGATTCATGGGATGATTCAGCAGGAACCCATGGTGCAGTCTGATGATTTTGGTTTAAATGGACGATTAGGCTCTAATTTTTCACCTCAAATGAAGATGGTAAGACTTGCTGACATAACCGGTTCTTCAAAAGCCAGTAATGCTCCTCAAATGTTAGACATGGATACCATACACAATTTGTCCAGTCAAACTGCTCCTACAAATGTTAATCCGACAGCTCTCAAGGCCCAATTCTTCAACAACTCAAGTCAATCAGATTCCAACAATTTATCAGGTCCAGAATCTGGGTTTGAGTCACGAAGATCGTCTTAG 2565 0.3887 MLEVLLEHFKTNDPQNSRVIIFSNFRESVRDIMVAIGGIGDQIRATEFIGQSSGKTTKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMRRTGRKHDGRVVVLAFEGAELKGYLKKKAKSKTITKHMRNGGINSFVFHPSPRMIPHIFKPEVQYVELSIEKFIPRQNNVRENHLQTSASKDELTLAETYLLGKYFHSTGENRCRLSLIAFPHSQTFPSRVHKVKHSCGTWMFIDMMQRLQGLAACAGNNENSTLQEGRCLENSKPLVSIELDEAKNDNRDKMGRNIDSENCLKVDSCHMKIEDFVDLTLQDNTFCDTGECQEETADGDETIPETPDAKRNLSNEGAIATEIANFVEKQTSSLAVDACDNGMRDEELSPRLTNLIISGVVPESPIEERGKSRNKETKNVIIDNDNGKNVCTSPVNETQTPLLELKNCVIRRERVFVSQIEERHMHIVDPSINEESHPSCGEMSKAYIEPVEFAGSGLLAIAFVSMSFADHGIQRLAYDTLVIFKNVLEKCQKMEGMVTDLTLAKENQTSFEEYLSNNPNVDPGIDLTVTILTTGFWPSYKYFNLNLPAEMVKCVEVFKEFYQTKTKHRKLTWIYSLGTYNASGKFEPKTMELVVTTYQALALLLFNSTDKWSYSEIMTQLKLTDDDVPQRQHSAVRDERNSDTPVLEDYRSRFSSPSRMFSLANASPFQSRDMVINREFSYQNEMNPSSSISGRNESMIHGMIQQEPMVQSDDFGLNGRLGSNFSPQMKMVRLADITGSSKASNAPQMLDMDTIHNLSSQTAPTNVNPTALKAQFFNNSSQSDSNNLSGPESGFESRRSS 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02241 854 Pfam Cullin family 544 681 IPR001373 GO:0006511|GO:0031625
Vifa3g02241 854 Gene3D Cullin; Chain C, Domain 2 577 731 - -
Vifa3g02241 854 CDD SF2_C_FANCM_Hef 1 129 - -
Vifa3g02241 854 Pfam Helicase conserved C-terminal domain 5 120 IPR001650 -
Vifa3g02241 854 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 1 726 - -
Vifa3g02241 854 ProSiteProfiles Cullin family profile. 545 689 IPR016158 -
Vifa3g02241 854 SMART helicmild6 31 121 IPR001650 -
Vifa3g02241 854 SUPERFAMILY Cullin homology domain 544 683 IPR036317 -
Vifa3g02241 854 FunFam ATP-dependent RNA helicase, putative 1 155 - -
Vifa3g02241 854 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 168 IPR001650 -
Vifa3g02241 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 132 IPR027417 -
Vifa3g02241 854 MobiDBLite consensus disorder prediction 831 854 - -
Vifa3g02241 854 SMART cul_2 531 639 IPR016158 -
Vifa3g02241 854 Gene3D - 1 155 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02241 Vifa-Chr3 562954500 562957136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02241 2 119 Eukaryotic Initiation Factors Gene Family AT3G13920 27.966 2.99e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02241 K10896 - gmx:100820078 687.182