LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g02236	ATGGAGGAAGGTCAAAGTAGTTCAAATTCCATACCTCATTTTCTCTCTAAGACTTATGAGATGGTTAGTGATCCTTCAACTGATGCCATTATTTCATGGAGTTGTACCAGTAAGAGTTTCATTGTTTGGAATCAACCTGATTTTTCAAAGGATTTGTTGCCCAAATTCTTTAAGCATAATAACTTCTCAAGTTTCATCAGACAGCTTAACACCTATGGTTTTAGAAAAGTTGATCAAGAACAATGGGAATTCGCAAATGAATATTTCATAAGAGATCAACCACATCTTATGAATAATATCCACAGGCGCAAACCAGTTCATAGCCATTCTCTGACTAATGCTCATGACCAACAGGCAGCAACTGATGGTGCTAGTGCTGCTCCATTAACCGACTCAGAACGGTGGAATTTGAAAGCCGAGATAGAAAAACTTAAACACGAGAAAGAACAACTGCTTATGGAATTTCAGATACAAGAAGAGGAGTGGAAACAGAATGAGATGCAGTTACATGACTCAAAGGATCGTTTGCAAAAGTTGGAAGTGAATCAACAAAGTATGATCTCTTCTGTTGGTCAAGTGCTGCAGAAATCGAGTGAAGAGGTAGGTCTCCAGTCAGTAACGGTAAACTCGGGGAGAAAACGAACATGTCTGAGAAATAATCTCTTTAATAATTTAGCTACCATTGAAATTCCTTTGAAAACTTCTCAAGTGTCATCTAGAGAAAAGGATGAGAGTGTGTCTGTTCTCTCTATAAACATGGAACGATTGAATCTGCTGGAATCATCGTTGACGTTTTGGGAGAATATTGTAAATGATGTTAGCGACATATATTTTCAAACTCATTCAAACTTAAACCTTGATGATTCTTTGAATTGTGGACCTGACCCAATAATTTCTTATGTGCGACAAGAATCTGAAGTTCATCTCGAGTCACCACGAAACAACATGAACTCTCTACAAGATTTAGTCGCTATTCCTAATCCTGGCCCTGTTGCACCTGAGCCAGCTGTTAATCCTGTTATTGATGCTCCTAACCCTGTTGCACCGAAAGAACAACCTGTCGCAACAACACCGGTTACTACGGGATATAATTCACCATTTTGGGAAAAATACTTGGTGGAAAATCCTGATTTAGATGAATCAGAAAATCTTAGTGAGCTTAGCAAATTTTGCTGGAGCCGTAATAATAAATAA	1194	0.3819	MEEGQSSSNSIPHFLSKTYEMVSDPSTDAIISWSCTSKSFIVWNQPDFSKDLLPKFFKHNNFSSFIRQLNTYGFRKVDQEQWEFANEYFIRDQPHLMNNIHRRKPVHSHSLTNAHDQQAATDGASAAPLTDSERWNLKAEIEKLKHEKEQLLMEFQIQEEEWKQNEMQLHDSKDRLQKLEVNQQSMISSVGQVLQKSSEEVGLQSVTVNSGRKRTCLRNNLFNNLATIEIPLKTSQVSSREKDESVSVLSINMERLNLLESSLTFWENIVNDVSDIYFQTHSNLNLDDSLNCGPDPIISYVRQESEVHLESPRNNMNSLQDLVAIPNPGPVAPEPAVNPVIDAPNPVAPKEQPVATTPVTTGYNSPFWEKYLVENPDLDESENLSELSKFCWSRNNK	397

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g02236	397	SUPERFAMILY	"Winged helix" DNA-binding domain	9	103	IPR036390	-
	Vifa3g02236	397	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	4	234	IPR027725	-
	Vifa3g02236	397	MobiDBLite	consensus disorder prediction	107	128	-	-
	Vifa3g02236	397	Coils	Coil	134	161	-	-
	Vifa3g02236	397	MobiDBLite	consensus disorder prediction	111	125	-	-
	Vifa3g02236	397	Gene3D	-	6	104	IPR036388	-
	Vifa3g02236	397	ProSitePatterns	HSF-type DNA-binding domain signature.	53	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vifa3g02236	397	PRINTS	Heat shock factor (HSF) domain signature	52	64	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vifa3g02236	397	PRINTS	Heat shock factor (HSF) domain signature	65	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vifa3g02236	397	PRINTS	Heat shock factor (HSF) domain signature	14	37	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vifa3g02236	397	FunFam	Heat shock transcription factor 1	7	104	-	-
	Vifa3g02236	397	SMART	hsfneu3	10	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vifa3g02236	397	Pfam	HSF-type DNA-binding	14	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g02236	Vifa-Chr3	562230648	562232171	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g02236	7	376	HSF	AT4G18880	43.767	1.61e-76	241

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vifa3g02236		HSF_DNA-bind	7.4e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g02236	K09419		-	gmx:100820566	405.216