Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02235 ATGGACTTGTACGGTCGGAGCCCCACTAGAAATGGATCCAACCCGCTTAGTCAACATGAATGGCGTTCACCGACCGCTGAAGCTGCTCTCGGAGAGTCGATGTGGCAATTAACGCTTGGTGGTAGTGGTGGTGGTGAATCTTACCCGGAGAGACACGGTGTGCCTAATTGTGCTTATTATATGAGAACTGGGTTTTGTGGCTATGGTGGCAGGTGCCGTTTCAATCACCCGCGTGATCGTGCTGCGGTTGCTGCTGCCGTTAGAGCTACAGGGGACTACCCAGAACGGCTTGGGGAACCTCCGTGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGCGCATCCTGTAAATTCCACCATCCCAAAAATGGAGGGGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATACCCATTACGTCCGGGTGAGAATGAGTGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGCGTAACTTGTAAATTCCACCATCCTCAACCTGCAGGCACGTCATTGCCAGCTTCTGCACCTCAATTTTATCAACAGGTGCAATCTCCAACTGTTCCTCTGCCCGAACAGTATGGAGGAGCTTCCACAAGCTTGAGAGTGGCTAGGCCTCCCGTATTACCCGGTTCATATGTACAGGGGGCTTATGGTCCTGTACTTCTATCCCCAGGGGTTGTTCCGTTTCCTGGATGGAGTCCTTATTCGGCTCCAGTAAGTCCCGTGTTATCTCCTGGTGCGCAACCTGCTGTCGGGGCTACTTCTCTATATGGAGTGACCCAGTTGTCTTCTTCAACATCAGCTTTTGCTAGACCTTACACTCCTTTGCCCTCTTCTCCCGGTCCTGCAGGAAGCAGTCTGCAGGAGAAAATATTTCCTGAAAGACCCGGTGAACCGCTCTGCCAATACTTTCTCAGAAACGGGGACTGTAAATTTGGATTGGCTTGTAGATATCATCATCCACAGGACCTCGTTGCTGCACGGCCAGTTCTTAGCCCCGTTGGTCTTCCTTTACGCCCGGATCTCGATATTGACAACCTCGCTTGA 1059 0.5005 MDLYGRSPTRNGSNPLSQHEWRSPTAEAALGESMWQLTLGGSGGGESYPERHGVPNCAYYMRTGFCGYGGRCRFNHPRDRAAVAAAVRATGDYPERLGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPGENECSYYLKTGQCKFGVTCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQYGGASTSLRVARPPVLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSPGPAGSSLQEKIFPERPGEPLCQYFLRNGDCKFGLACRYHHPQDLVAARPVLSPVGLPLRPDLDIDNLA 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02235 352 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Vifa3g02235 352 ProSiteProfiles Zinc finger C3H1-type profile. 142 170 IPR000571 GO:0046872
Vifa3g02235 352 ProSiteProfiles Zinc finger C3H1-type profile. 51 79 IPR000571 GO:0046872
Vifa3g02235 352 PANTHER PROTEIN PHOSPHATASE RELATED 32 345 - -
Vifa3g02235 352 Gene3D - 292 337 - -
Vifa3g02235 352 SUPERFAMILY CCCH zinc finger 145 170 IPR036855 GO:0046872
Vifa3g02235 352 SUPERFAMILY CCCH zinc finger 99 124 IPR036855 GO:0046872
Vifa3g02235 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 326 IPR000571 GO:0046872
Vifa3g02235 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 78 IPR000571 GO:0046872
Vifa3g02235 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 169 IPR000571 GO:0046872
Vifa3g02235 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 123 IPR000571 GO:0046872
Vifa3g02235 352 SUPERFAMILY CCCH zinc finger 54 80 IPR036855 GO:0046872
Vifa3g02235 352 MobiDBLite consensus disorder prediction 7 21 - -
Vifa3g02235 352 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Vifa3g02235 352 SMART c3hfinal6 96 123 IPR000571 GO:0046872
Vifa3g02235 352 SMART c3hfinal6 142 169 IPR000571 GO:0046872
Vifa3g02235 352 SMART c3hfinal6 51 78 IPR000571 GO:0046872
Vifa3g02235 352 Gene3D - 94 179 - -
Vifa3g02235 352 Gene3D - 45 90 - -
Vifa3g02235 352 SUPERFAMILY CCCH zinc finger 302 327 IPR036855 GO:0046872
Vifa3g02235 352 ProSiteProfiles Zinc finger C3H1-type profile. 96 124 IPR000571 GO:0046872
Vifa3g02235 352 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02235 Vifa-Chr3 561614014 561616532 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02235 19 344 C2H2 Transcription Factor Family AT5G18550 52.478 2.88e-112 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa3g02235 zf-CCCH 3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02235 - - lja:Lj5g3v1665190.1 626.706