Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02230 ATGAGTGATAACAAAGGCAAAAATCCAGACAGAGAACTCCATAACTACCACAACAACTTTACATCTGATGAAGATCATGATGCAATCAAAGAGCAAGATCGTTTGCTTCCAATAGCTAATGTTGGTCGCATCATGAAACAAATCTTGCCTCCAAATGCAAAAATCTCCAAAGAAGCTAAAGAAACCATGCAAGAATGTGTGTCTGAGTTTGTTAGTTTTGTAACTGGTGAAGCTTCTGACAAGTGTCACAAAGAGAAACGCAAGACGGTGAACGGTGATGATGTTTGTTGGGCCATGGCTACTCTAGGGTTTGATGATTATGCTGAGCCACTCAAAAGGTATTTGTATAAGTATAGGGAATTGGATGTGGAAAGAGGTAATAACCAAAATAAGGGTAATGAAACTGAAACATGTAATAATTATGATGCTAAGAAACAACAAAGTCCAAGAAAAGGTTCCTCTTCTTTGTTCAATAATAGGAACAGTGGTCCTCAGTCTAGGGGATTTTGA 510 0.3804 MSDNKGKNPDRELHNYHNNFTSDEDHDAIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDVCWAMATLGFDDYAEPLKRYLYKYRELDVERGNNQNKGNETETCNNYDAKKQQSPRKGSSSLFNNRNSGPQSRGF 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02230 169 Gene3D Histone, subunit A 23 160 IPR009072 GO:0046982
Vifa3g02230 169 SUPERFAMILY Histone-fold 32 152 IPR009072 GO:0046982
Vifa3g02230 169 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 35 99 IPR003958 -
Vifa3g02230 169 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 154 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vifa3g02230 169 MobiDBLite consensus disorder prediction 123 169 - -
Vifa3g02230 169 MobiDBLite consensus disorder prediction 1 28 - -
Vifa3g02230 169 MobiDBLite consensus disorder prediction 130 169 - -
Vifa3g02230 169 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
Vifa3g02230 169 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Vifa3g02230 169 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Vifa3g02230 169 FunFam Nuclear transcription factor Y subunit B-3 24 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02230 Vifa-Chr3 559149387 559149896 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02230 24 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.504 2.73e-61 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa3g02230 CBFD_NFYB_HMF 4.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02230 K08065 - qsu:112003935 214.927