Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02223 ATGGTCGAAACCAGACGTGGCTCTTCATCTTCCAAACGCTCGCTTTCTTCTCCTTCTCCTTCCAACGCCAAACGATCCAAGGTTTCTGAGGATGCTTCATCTAATCCCTTGCCTTCGATTCCCGTCAAGGAATCTGTAACTGGTAACGAATCTGGTGAACCGAAGATACAGCCCTCTGATCTACCAGAAACGGCGTCGTTGAAGATTCTTGATGGTGATAACAATAAACCTCCTTCTGTGCCAATTGAAACTGATCCTTTGGTGTTTCCTCAGTGTCCAGGTGAAACCGGAGAGAAATCAAAGGCAAAGGCGGTGCAGCCGCCAGTTTCTTGTCGGAAGAAACGCACGGTGGTGAAACCGATTCATACAGCTGCTGCGTGGGGGAAGCTTATATCTCAATCTTCTCAGAATCCTCACTTGTCCATTAGTGACCCAATCTTCACAGTTGGTCAAGGCCGTCAAAGTAATTTGACGCTTAAAGATCCTACTGTTGGTAATGTTTTGTGCAAATTGAGCCACATAGAGCAGCAACATGGGGGTTCATCAGTTGCCCTACTGGAAATCACAGGGGGTAAAGGTGTTGTTCAAGTCAACGGTAAGACTTACCGAAGGAACGCCCGGCTGATTTTAAATGGCGGCGATGAGGTGATATTTGGTTCTTCGGGAAAACAGGCTTACATCTTTCAACAGTTAAATAGTAATAATGTTTCTACTGCTGGTATACCTCCTGTGAGTATTTTAGAAGCCCAGGGTGCTTCAATGAATGGGATGCAAGTTGAAGCTAGATCTGGAGATCCTTCGGATGTTGCAGGAGCATCAATATTGGCCTCTCTATCTAATATTCACAAAGATTTATCTCTCGTTTCCCCTCCAGCTAAAACATGCAAGAAACAGAATTCTGATATCTCATCACTACCTTCTGGCCATGGGGATAATGTTCCGGCCAATGAAAGGAAAGATGCCACCAATAATGATGAATTGACTGGAGTTATTTCTTCTGGCAAAGCTGTTCCTGCATCCTCTACCACTGTGAATGAAAATCCTAGCCTTGACACCATGGATGTTGATGCCAATGCGGATACAAGTGTAGGGAAGATGTCTGCTACTAATTACGAATTGAGACCGTTATTGTGCATGCTTTCCGGCGGCTCAGGAACTGAATTTGATTTAAGTGGCATTCACAAGATATTAGAAGATCGAAAGGAATTAGGAGAACTCCTTAAAGGTGCTGATACAACAACAATATTAGCATCTACCAGGAGACAAGCATTTAAGGACAGCCTAGAACAGAGAATTCTCAATGCTGAGGATATTGATGTCTCTTTTGAGGCATTCCCATATTATTTAAGTGACACAACAAAGAATGTGTTGATTGCTTCTACATATATTCATTTGAAGTGCAATGGCTTTGGAAAATATGCTTCAGATCTCCCGTCGGTGTCCCCACGGATACTGTTATCTGGTCCTTCAGGTTCGGAAATATATCAGGAGACTTTGTCCAAGGCACTTGCTAAGCACTTTGGTGCCAAACTACTGATTGTGGATTCACTTTCGCTGCCTGGTGGAACACTATCGAAGGAAGCTGATTCTGCCAAAGAAAGTTCAAAGCCTGAAAAGCCATCTGTTTTGTCCAAGAGAAGTAGCCATGCTCCTACATTACATCACAGGAAACCCACTTCTAGTGTTGATGCTGAAATTATTGGTGGATCTACATTAAGTTCACAGGCTATGCTGAAGCAAGAGGTTTCTACTGCATCATCAAAAGGCATTGCTCTTAAAAAAGGTGATCGGGTAAAATTTGTCGGTAACTTTCCACCCACTGTCTCGTCATTGCAAAATTATTCTTCAAGTGGTAGAGGACCAACCTATGGTTTCCGGGGCAAGGTTGTACTTGCTTTTGAAGATAACGAGTCTTCAAAAATTGGGGTCAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCATATCGAAGATGATCATGGGTTCTTTTGTTCTGCAAGCCACTTACAACGAATAGAGAGTTCAGGAGGGGATGACGACAAAGTTGCAATTAATGAAATCTTTGAGGTTGCTGCTAATCAATGTAAAACTGGTGCACTTGTTTTGTTCATTAAAGATATAGAGAAGGCAATGGTTGGGAACAATGATGTTTTGAAAAGTAAATTTGAAACCCTACCACAAAATATTGTGGTAATTGGCTCAAATACTCAGCTGGACAGTCGTAAGGAGAAGACCCATCCCGGGGGTCTTCTGTTTACAAAGTTTGGGAGCAATCAGACAGCTCTACTTGATCTTGCTTTTCCGGATAACTTCAGCAAACTACATGATAGGAGCAAAGAAAGCTCCAAAGTAACAAAGCAACTCAACCGCCTTTTCCCAAACAAAGTGACAATACAGTTGCCTCAGGATGAGGCTTTACTTTTGGATTGGAAGCAGCAGTTAGATCGTGATATTGAAACTATGAAAGCTCATTCCAATATTGTCATGCTTCGTTCGGTTCTCAAAAGAATTGGATGGGATTGTTCTGACCTCGACACTATTTGCATCAAAGACCAAACCCTGACTACTGAAAATGTGGAGAAAATCATTGGCTGGGCTATAAGTTATCATTTTATGCATTCATCTGAAGCTTCTACCAAAGAAGTAAAGCGTGTGATATCTGCAGAAAGCATTAAGTATGGGCTTGACATTCTTCAGGGTGTCCAAAATGAGAACAAGAGCGTAAAAAAGTCACTGAAGGACGTGGTTACTGAGAATGAATTTGAGAAAAAGTTGCTTGGTGATGTTATTCCGCCAACTGAACTTGGAGTCACGTTTGAAGATATTGGAGCTTTAGAAAATGTGAAGGAGACTTTGAAGGAATTGGTCATGCTTCCTCTTAAAAGGCCTGAACTGTTTTGTAAAGGACAGCTTACTAAGCCTTGCAAGGGAATATTGCTTTTCGGCCCCCCCGGCACGGGAAAAACAATGCTCGCAAAGGCTGTAGCAACTGAAGCTGGAGCCAATTTCATAAACATTTCAATGTCCAGTATTACTTCCAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTCTCCCTAGCCAGCAAAATTGCTCCAAGTGTTATATTTGTTGATGAGGTTGATAGTATGTTAGGAAGACGTGAAAACCCTGGTGAGCACGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAAAAGAAAAAGAGCGTATACTTGTTCTTGCTGCTACAAATAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCACGGAGATTGATGGTTGATTTGCCTGATGCTCCAAATAGAGGAAAAATTCTGAGTGTCATTTTAGCAAAAGAAGATTTGGCATCCGATGTTGATTTGGAAGCAATAGCAAATATGACTGATGGATACTCTGGAAGTGACCTAAAGAATCTGTGTGTCACAGCAGCTCACTGCCCAATAAGGGAGATCTTGGAAAAGGAAAAGAAGGAAAAAAGCTTAGCATTGTCAGAGAACAAACCTGAACCTGAATTGTGTAGCAGTGCCGACATTCGCCCCTTAAAGATGGAGGATTTTAGATATGCACATGAGCAGGTGTGTGCAAGTGTGTCATCGGAGTCGACAAATATGAATGAGCTACAACAATGGAATGATCTTTATGGAGAAGGTGGATCTCGAAAAACGAGATCTTTAAGTTACTTCATGTAA 3738 0.4205 MVETRRGSSSSKRSLSSPSPSNAKRSKVSEDASSNPLPSIPVKESVTGNESGEPKIQPSDLPETASLKILDGDNNKPPSVPIETDPLVFPQCPGETGEKSKAKAVQPPVSCRKKRTVVKPIHTAAAWGKLISQSSQNPHLSISDPIFTVGQGRQSNLTLKDPTVGNVLCKLSHIEQQHGGSSVALLEITGGKGVVQVNGKTYRRNARLILNGGDEVIFGSSGKQAYIFQQLNSNNVSTAGIPPVSILEAQGASMNGMQVEARSGDPSDVAGASILASLSNIHKDLSLVSPPAKTCKKQNSDISSLPSGHGDNVPANERKDATNNDELTGVISSGKAVPASSTTVNENPSLDTMDVDANADTSVGKMSATNYELRPLLCMLSGGSGTEFDLSGIHKILEDRKELGELLKGADTTTILASTRRQAFKDSLEQRILNAEDIDVSFEAFPYYLSDTTKNVLIASTYIHLKCNGFGKYASDLPSVSPRILLSGPSGSEIYQETLSKALAKHFGAKLLIVDSLSLPGGTLSKEADSAKESSKPEKPSVLSKRSSHAPTLHHRKPTSSVDAEIIGGSTLSSQAMLKQEVSTASSKGIALKKGDRVKFVGNFPPTVSSLQNYSSSGRGPTYGFRGKVVLAFEDNESSKIGVRFDKSIPDGNDLGGHIEDDHGFFCSASHLQRIESSGGDDDKVAINEIFEVAANQCKTGALVLFIKDIEKAMVGNNDVLKSKFETLPQNIVVIGSNTQLDSRKEKTHPGGLLFTKFGSNQTALLDLAFPDNFSKLHDRSKESSKVTKQLNRLFPNKVTIQLPQDEALLLDWKQQLDRDIETMKAHSNIVMLRSVLKRIGWDCSDLDTICIKDQTLTTENVEKIIGWAISYHFMHSSEASTKEVKRVISAESIKYGLDILQGVQNENKSVKKSLKDVVTENEFEKKLLGDVIPPTELGVTFEDIGALENVKETLKELVMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKEKERILVLAATNRPFDLDEAVIRRLPRRLMVDLPDAPNRGKILSVILAKEDLASDVDLEAIANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKEKSLALSENKPEPELCSSADIRPLKMEDFRYAHEQVCASVSSESTNMNELQQWNDLYGEGGSRKTRSLSYFM 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02223 1245 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 422 1244 - -
Vifa3g02223 1245 MobiDBLite consensus disorder prediction 292 356 - -
Vifa3g02223 1245 MobiDBLite consensus disorder prediction 1 106 - -
Vifa3g02223 1245 Pfam ATPase family associated with various cellular activities (AAA) 981 1110 IPR003959 GO:0005524|GO:0016887
Vifa3g02223 1245 MobiDBLite consensus disorder prediction 1 54 - -
Vifa3g02223 1245 Gene3D - 126 238 - -
Vifa3g02223 1245 ProSitePatterns AAA-protein family signature. 1084 1103 IPR003960 GO:0005524|GO:0016887
Vifa3g02223 1245 MobiDBLite consensus disorder prediction 292 310 - -
Vifa3g02223 1245 MobiDBLite consensus disorder prediction 525 563 - -
Vifa3g02223 1245 CDD RecA-like_ATAD1 944 1110 - -
Vifa3g02223 1245 MobiDBLite consensus disorder prediction 325 356 - -
Vifa3g02223 1245 Pfam AAA+ lid domain 1134 1170 IPR041569 -
Vifa3g02223 1245 SUPERFAMILY SMAD/FHA domain 127 224 IPR008984 GO:0005515
Vifa3g02223 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 940 1216 IPR027417 -
Vifa3g02223 1245 Gene3D - 1113 1207 - -
Vifa3g02223 1245 MobiDBLite consensus disorder prediction 529 543 - -
Vifa3g02223 1245 Gene3D - 939 1219 IPR027417 -
Vifa3g02223 1245 SMART AAA_5 977 1114 IPR003593 GO:0016887
Vifa3g02223 1245 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 939 1114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02223 Vifa-Chr3 555713832 555726953 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02223 976 1181 Calmodulin-binding Proteins AT3G56690 35.885 1.43e-31 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02223 - - gmx:100801477 1840.47