Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02222 ATGGTCGAAACCAGACGTGGCTCTTCATCTTCCAAACGCTCGCTTTCTTCTCCTTCTCCTTCCAACGCCAAACGATCCAAGGTTTCTGAGGATGCTTCATCTAATCCCTTGCCTTCGATTCCCGTCAAGGAATCTGTAACTGGTAACGAATCTGGTGAACCGAAGATACAGCCCTCTGATCTACCAGAAACGGCGTCGTTGAAGATTCTTGATGGTGATAACAATAAACCTCCTTCTGTGCCAATTGAAACTGATCCTTTGGTGTTTCCTCAGTGTCCAGGTGAAACCGGAGAGAAATCAAAGGCAAAGGCGGTGCAGCCGCCAGTTTCTTGTCGGAAGAAACGCACGGTGGTGAAACCGATTCATACAGCTGCTGCGTGGGGGAAGCTTATATCTCAATCTTCTCAGAATCCTCACTTGTCCATTAGTGACCCAATCTTCACAGTTGGTCAAGGCCGTCAAAGTAATTTGACGCTTAAAGATCCTACTGTTGGTAATGTTTTGTGCAAATTGAGCCACATAGAGCAGCAACATGGGGGTTCATCAGTTGCCCTACTGGAAATCACAGGGGGTAAAGGTGTTGTTCAAGTCAACGGTAAGACTTACCGAAGGAACGCCCGGCTGATTTTAAATGGCGGCGATGAGGTGATATTTGGTTCTTCGGGAAAACAGGCTTACATCTTTCAACAGTTAAATAGTAATAATGTTTCTACTGCTGGTATACCTCCTGTGAGTATTTTAGAAGCCCAGGGTGCTTCAATGAATGGGATGCAAGTTGAAGCTAGATCTGGAGATCCTTCGGATGTTGCAGGAGCATCAATATTGGCCTCTCTATCTAATATTCACAAAGATTTATCTCTCGTTTCCCCTCCAGCTAAAACATGCAAGAAACAGAATTCTGATATCTCATCACTACCTTCTGGCCATGGGGATAATGTTCCGGCCAATGAAAGGAAAGATGCCACCAATAATGATGAATTGACTGGAGTTATTTCTTCTGGCAAAGCTGTTCCTGCATCCTCTACCACTGTGAATGAAAATCCTAGCCTTGACACCATGGATGTTGATGCCAATGCGGATACAAGTGTAGGGAAGATGTCTGCTACTAATTACGAATTGAGACCGTTATTGTGCATGCTTTCCGGCGGCTCAGGAACTGAATTTGATTTAAGTGGCATTCACAAGATATTAGAAGATCGAAAGGAATTAGGAGAACTCCTTAAAGGTGCTGATACAACAACAATATTAGCATCTACCAGGAGACAAGCATTTAAGGACAGCCTAGAACAGAGAATTCTCAATGCTGAGGATATTGATGTCTCTTTTGAGGCATTCCCATATTATTTAAGTGACACAACAAAGAATGTGTTGATTGCTTCTACATATATTCATTTGAAGTGCAATGGCTTTGGAAAATATGCTTCAGATCTCCCGTCGGTGTCCCCACGGATACTGTTATCTGGTCCTTCAGGTTCGGAAATATATCAGGAGACTTTGTCCAAGGCACTTGCTAAGCACTTTGGTGCCAAACTACTGATTGTGGATTCACTTTCGCTGCCTGGTGGAACACTATCGAAGGAAGCTGATTCTGCCAAAGAAAGTTCAAAGCCTGAAAAGCCATCTGTTTTGTCCAAGAGAAGTAGCCATGCTCCTACATTACATCACAGGAAACCCACTTCTAGTGTTGATGCTGAAATTATTGGTGGATCTACATTAAGTTCACAGGCTATGCTGAAGCAAGAGGTTTCTACTGCATCATCAAAAGGCATTGCTCTTAAAAAAGGTGATCGGGTAAAATTTGTCGGTAACTTTCCACCCACTGTCTCGTCATTGCAAAATTATTCTTCAAGAGGACCAACCTATGGTTTCCGGGGCAAGGTTGTACTTGCTTTTGAAGATAACGAGTCTTCAAAAATTGGGGTCAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCATATCGAAGATGATCATGGGTTCTTTTGTTCTGCAAGCCACTTACAACGAATAGAGAGTTCAGGAGGGGATGACGACAAAGTTGCAATTAATGAAATCTTTGAGGTTGCTGCTAATCAATGTAAAACTGGTGCACTTGTTTTGTTCATTAAAGATATAGAGAAGGCAATGGTTGGGAACAATGATGTTTTGAAAAGTAAATTTGAAACCCTACCACAAAATATTGTGGTAATTGGCTCAAATACTCAGCTGGACAGTCGTAAGGAGAAGACCCATCCCGGGGGTCTTCTGTTTACAAAGTTTGGGAGCAATCAGACAGCTCTACTTGATCTTGCTTTTCCGGATAACTTCAGCAAACTACATGATAGGAGCAAAGAAAGCTCCAAAGTAACAAAGCAACTCAACCGCCTTTTCCCAAACAAAGTGACAATACAGTTGCCTCAGGATGAGGCTTTACTTTTGGATTGGAAGCAGCAGTTAGATCGTGATATTGAAACTATGAAAGCTCATTCCAATATTGTCATGCTTCGTTCGGTTCTCAAAAGAATTGGATGGGATTGTTCTGACCTCGACACTATTTGCATCAAAGACCAAACCCTGACTACTGAAAATGTGGAGAAAATCATTGGCTGGGCTATAAGTTATCATTTTATGCATTCATCTGAAGCTTCTACCAAAGAAGTAAAGCGTGTGATATCTGCAGAAAGCATTAAGTATGGGCTTGACATTCTTCAGGGTGTCCAAAATGAGAACAAGAGCGTAAAAAAGTCACTGAAGGACGTGGTTACTGAGAATGAATTTGAGAAAAAGTTGCTTGGTGATGTTATTCCGCCAACTGAACTTGGAGTCACGTTTGAAGATATTGGAGCTTTAGAAAATGTGAAGGAGACTTTGAAGGAATTGGTCATGCTTCCTCTTAAAAGGCCTGAACTGTTTTGTAAAGGACAGCTTACTAAGCCTTGCAAGGGAATATTGCTTTTCGGCCCCCCCGGCACGGGAAAAACAATGCTCGCAAAGGCTGTAGCAACTGAAGCTGGAGCCAATTTCATAAACATTTCAATGTCCAGTATTACTTCCAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTCTCCCTAGCCAGCAAAATTGCTCCAAGTGTTATATTTGTTGATGAGGTTGATAGTATGTTAGGAAGACGTGAAAACCCTGGTGAGCACGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAAAAGAAAAAGAGCGTATACTTGTTCTTGCTGCTACAAATAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCACGGAGATTGATGGTTGATTTGCCTGATGCTCCAAATAGAGGAAAAATTCTGAGTGTCATTTTAGCAAAAGAAGATTTGGCATCCGATGTTGATTTGGAAGCAATAGCAAATATGACTGATGGATACTCTGGAAGTGACCTAAAGAATCTGTGTGTCACAGCAGCTCACTGCCCAATAAGGGAGATCTTGGAAAAGGAAAAGAAGGAAAAAAGCTTAGCATTGTCAGAGAACAAACCTGAACCTGAATTGTGTAGCAGTGCCGACATTCGCCCCTTAAAGATGGAGGATTTTAGATATGCACATGAGCAGGTGTGTGCAAGTGTGTCATCGGAGTCGACAAATATGAATGAGCTACAACAATGGAATGATCTTTATGGAGAAGGTGGATCTCGAAAAACGAGATCTTTAAGTTACTTCATGTAA 3732 0.4204 MVETRRGSSSSKRSLSSPSPSNAKRSKVSEDASSNPLPSIPVKESVTGNESGEPKIQPSDLPETASLKILDGDNNKPPSVPIETDPLVFPQCPGETGEKSKAKAVQPPVSCRKKRTVVKPIHTAAAWGKLISQSSQNPHLSISDPIFTVGQGRQSNLTLKDPTVGNVLCKLSHIEQQHGGSSVALLEITGGKGVVQVNGKTYRRNARLILNGGDEVIFGSSGKQAYIFQQLNSNNVSTAGIPPVSILEAQGASMNGMQVEARSGDPSDVAGASILASLSNIHKDLSLVSPPAKTCKKQNSDISSLPSGHGDNVPANERKDATNNDELTGVISSGKAVPASSTTVNENPSLDTMDVDANADTSVGKMSATNYELRPLLCMLSGGSGTEFDLSGIHKILEDRKELGELLKGADTTTILASTRRQAFKDSLEQRILNAEDIDVSFEAFPYYLSDTTKNVLIASTYIHLKCNGFGKYASDLPSVSPRILLSGPSGSEIYQETLSKALAKHFGAKLLIVDSLSLPGGTLSKEADSAKESSKPEKPSVLSKRSSHAPTLHHRKPTSSVDAEIIGGSTLSSQAMLKQEVSTASSKGIALKKGDRVKFVGNFPPTVSSLQNYSSRGPTYGFRGKVVLAFEDNESSKIGVRFDKSIPDGNDLGGHIEDDHGFFCSASHLQRIESSGGDDDKVAINEIFEVAANQCKTGALVLFIKDIEKAMVGNNDVLKSKFETLPQNIVVIGSNTQLDSRKEKTHPGGLLFTKFGSNQTALLDLAFPDNFSKLHDRSKESSKVTKQLNRLFPNKVTIQLPQDEALLLDWKQQLDRDIETMKAHSNIVMLRSVLKRIGWDCSDLDTICIKDQTLTTENVEKIIGWAISYHFMHSSEASTKEVKRVISAESIKYGLDILQGVQNENKSVKKSLKDVVTENEFEKKLLGDVIPPTELGVTFEDIGALENVKETLKELVMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKEKERILVLAATNRPFDLDEAVIRRLPRRLMVDLPDAPNRGKILSVILAKEDLASDVDLEAIANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKEKSLALSENKPEPELCSSADIRPLKMEDFRYAHEQVCASVSSESTNMNELQQWNDLYGEGGSRKTRSLSYFM 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02222 1243 MobiDBLite consensus disorder prediction 292 356 - -
Vifa3g02222 1243 Pfam AAA+ lid domain 1132 1168 IPR041569 -
Vifa3g02222 1243 MobiDBLite consensus disorder prediction 1 106 - -
Vifa3g02222 1243 CDD RecA-like_ATAD1 942 1108 - -
Vifa3g02222 1243 MobiDBLite consensus disorder prediction 1 54 - -
Vifa3g02222 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 938 1214 IPR027417 -
Vifa3g02222 1243 Gene3D - 126 238 - -
Vifa3g02222 1243 ProSitePatterns AAA-protein family signature. 1082 1101 IPR003960 GO:0005524|GO:0016887
Vifa3g02222 1243 MobiDBLite consensus disorder prediction 292 310 - -
Vifa3g02222 1243 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 937 1112 - -
Vifa3g02222 1243 MobiDBLite consensus disorder prediction 525 562 - -
Vifa3g02222 1243 Pfam ATPase family associated with various cellular activities (AAA) 979 1108 IPR003959 GO:0005524|GO:0016887
Vifa3g02222 1243 MobiDBLite consensus disorder prediction 325 356 - -
Vifa3g02222 1243 SUPERFAMILY SMAD/FHA domain 127 224 IPR008984 GO:0005515
Vifa3g02222 1243 Gene3D - 1111 1205 - -
Vifa3g02222 1243 Gene3D - 937 1217 IPR027417 -
Vifa3g02222 1243 SMART AAA_5 975 1112 IPR003593 GO:0016887
Vifa3g02222 1243 MobiDBLite consensus disorder prediction 529 543 - -
Vifa3g02222 1243 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 422 1242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02222 Vifa-Chr3 555713832 555726953 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02222 974 1179 Calmodulin-binding Proteins AT3G56690 35.885 1.50e-31 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02222 - - gmx:100801477 1845.48