Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02221 ATGGTTGAAACCAGGCGCAGTTCGTCTTCCTCCAAACGTTCTCTTTCTTCTGCTCCTCCCTCTTCTTCTCCTTCAACCACCAAACGATCCAAGAAACAGGTCTCTGAGGATGTTTCATCCACCGCTAGCCCCTCACCGCTGGTCAACGAATCTGGTGAACAGAAGATACGGTTATCTGATCTGCAAGAAACGGCGTCGTTGAAGGCTGTTGATGGTGAGACTGAGAATAACAAGTCTGCTTCTGTTCTGGTGTCTTCTCCTCAGTGTCTAGAATCAGGTGGGATTACAGAGAAATCCAACGGGTTGCCGCCCTTAGCTCGGTCGAAGAAACGTTGCTTAAAATCGAGTCCTGAGATTGCTTGGGGGAGGCTCATTTCTCAATCTTCTGAGAATCCCCACGTGCCCATATCTGAACCTATCTACACTGTTGGTCAATGTCGTCAGTGTAATTTATGGCTTAAAGATCCCAATGTTAGTACTGTTTTGTGCAAATTGAGCCACATAGAGCATGGAGGTTCATCTGTTGCATTGCTGGAAGTCATAGGGAGTAAAGGTGAAGTGAAAGTTAACGGGAAGATATATGGGAAGAAATGCCGTCTTATTTTGACTGGAGGCGATGAAGTTGTCTTTGGTTTTTCCGGCAAGCATGCTTATATATTTCAGCAGCTCCTCGATAATATCTCTGCTGCCAATATTCCTCCTCCTGTGAGCATTTTCGAAACCCAGGGTGCTCCAATAATTGGAGCACAGATTGAAGCTAGACCTGGAGATCTGTCTGCTGTTGCTGGGGCTTCAATATTGACCTCTTTTTCTAATTTTAATGAAGATTTATCTCTCATTTCACCCCCTGCTAACACTGGCAAGAACACGCAGCAGAATACTGACGCTTTGTCACTACCTGCCGGCGATGGGGATGATAAGGCAAATGTTGACGTGAAGCACAACACCGTTAATAACGAACCAGATGGAGTTTTTTATGCTGAGGAAACTGGTTGTCCATCCTCTACCACTGTTAATGAAGATCCTAAGGTTGACGCTGTAGAAGTCAACGTCAGTGTTGATGCAGATGTTGGGAATATGACTGCTGCCTCCAGCAATTTGAGACCATTATTCTGTCCTGATTTAGATTTAAGTGGCAAGATTACCAAGATATTGGAAAAAAATAAGGAATTGAAGGAACGCCTTAAAAGTGTTGATACCCGAAATATATTGGCATCACCCAAGCAACAAGCTCTTAAAGATAGTTTACAGATGAAAATTCTCAATGCTGAGAATATCGATGTTTCATTTGAAAGTTTTCCATATTATCTTAGTGACACAACAAAGAATGTTTTGATTGCTTCTGCGTACATTCATTTGAAGTGCAATGGCTCTGAAAAATATGTTTCTGACCTTCCATCGTTGTCCCCACGGTTATTGTTATCTGGTCCTACAGGCTCAGAAATATATCAGGAGACTCTGTCCAAGGCACTTGCAAAGCATTTTGATGCGTGGCTACTAGTTGTGGACTCTCTTTCACCTCCTGGTCGGGCACAATCGAAGGAAGTTGAAGCTACTAAAGAAAGTTCAAGGCCTGAAAGACCTGTGTTTATTAAGAGAAGTAGTACTCAGGCTGCTACATTACAACATAAGAAACCGGCTTGTAGTGTTGATGCCCAAATTATAGGTGGATCCGCATTAAGTTCACAGTTTATACTGAAGCAAGAAGTTTCTACGGCATCCTCAAAAGGCAGTACTCTTAAAGCAGGTGATCGGGTAAAGTTTGTCGGTGACTTCCCTTCTAATGGCCCATCACCACAAGTTTTTCCGTCGAGGGGACCAAGTTATGGCTGCAAGGGCAGAGTTCACATTGCTTTTGAAAACAACCGGTCTTCGAAAATTGGGGTTAGATTTGAGAAACCAATTCCAGATGGAAATGATCTTGGAGGCCTCTGCGAAAATAATCATGGCTTCTTTTGTTCTGCCAATCATTTAGTACTGGTAGATGGTTCTGGAGGGGATGACTCTAGCAAAGCTGCTATTAATGAAATCTTTGAGATTGCTTCTAATCTGAGTAAAAGTGGACCATTGGTGTTGTTGATTAAAGATATCGAAAAGGGTGTGTCTGGGAATTCAGAAATTTTGAAAAGTAAATTCGGAAGTTTGCCACAGAATGTTGTAGTAATTGGTTCACATATCCAACCGGACAATCGTAAGGAGAAGACACAACCTGGCAGCCTTCTGTTTACAAAATTTGGAGGCAATCAGACAGCACTGCTTGATCTTGCTTTTCCGGATAACTTTACTAGACTGCATGATAGGAGCAAAGAAACTCCCAAAGTCATGAAGCAACTCAATAGGCTTTTTCCAAACAAGGTTACAATACAGCTGCCTCAGGATGAGACTTTACTTTCTGATTGGAAGCAGCAGCTAGATCGTGACATAGAAACTATGAAAGCCCAGTCCAACGTTGCCAGCATTCGCCTAGTCCTCAACAAGTTTGGACTGGATTGTTCTGACCTTGAGACTCTTTGCATCAAAGATCAAGCTCTAACAACTGAAAATGTGGAGAAGATCATTGGTTGGGCCATAAGTTATCATTTTATGCATTCATCTGAAGTTTCTACCAAAGAATCAAAGCCTGTAATATCCGCAGAGAGCGTTTGGTATGGGTTTAACATTCTACAGGGCATTCAAAATGAGAACAAGAGCACAAAAACATCACTCAAGGACGTAGTTACTGAGAATGAATTTGAGAAAAAACTGCTTGGCGATGTTATTCCGCCAACTGATATTGGGGTCTCATTTGATGATATTGGAGCTTTAGAAAATGTAAAGGACACCTTAAAGGAGTTGGTTATGCTTCCTCTTCAAAGGCCTGAGTTATTTTGCAAAGGACAACTAACTAAGCCTTGCAAGGGAATCTTACTTTTTGGCCCTCCTGGCACTGGAAAAACCATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCGAATTTTATTAACATTTCCATGTCTAGCATTACTTCAAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGCGTTATTTTTGTTGATGAGGTTGATAGTATGTTAGGGAGACGTGAAAATCCCAGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAAAAGATAGAGAGCGTGTACTTGTTCTTGCTGCCACAAACAGACCTTTTGATCTCGATGAGGCGGTTATTAGGAGACTTCCGCGAAGATTGATGGTTAATTTGCCAGATACAGCAAACAGAGCGAAAATTATGAGAGTCATTTTAGCAAAAGAAGATTTGGCACCTGATGTTGATTTAGAAGCATTAGCAAATATGACTGACGGATACTCTGGAAGTGACATAAAGAATCTTTGTGTCACAGCTGCGCACTGTCCGATAAGAGAGATCTTGGAGAAGGAAAAGAAGGATAGAAGCTTTGCATTGGCTGAGAACAAACCTTTACCCGGTCTGTGTAGCAGTGCGGACATTCGTCCCTTAAAGATGGAAGATTTTAAATATGCACATGAGCAGGTGTGTGCAAGCGTGTCGTCGGATTCCTCAAATATGAACGAACTACTCCAATGGAATGACCTCTATGGAGAAGGTGGATCAAGGAAAAAGACATCTTTGAGCTATTTCATGTAA 3699 0.4215 MVETRRSSSSSKRSLSSAPPSSSPSTTKRSKKQVSEDVSSTASPSPLVNESGEQKIRLSDLQETASLKAVDGETENNKSASVLVSSPQCLESGGITEKSNGLPPLARSKKRCLKSSPEIAWGRLISQSSENPHVPISEPIYTVGQCRQCNLWLKDPNVSTVLCKLSHIEHGGSSVALLEVIGSKGEVKVNGKIYGKKCRLILTGGDEVVFGFSGKHAYIFQQLLDNISAANIPPPVSIFETQGAPIIGAQIEARPGDLSAVAGASILTSFSNFNEDLSLISPPANTGKNTQQNTDALSLPAGDGDDKANVDVKHNTVNNEPDGVFYAEETGCPSSTTVNEDPKVDAVEVNVSVDADVGNMTAASSNLRPLFCPDLDLSGKITKILEKNKELKERLKSVDTRNILASPKQQALKDSLQMKILNAENIDVSFESFPYYLSDTTKNVLIASAYIHLKCNGSEKYVSDLPSLSPRLLLSGPTGSEIYQETLSKALAKHFDAWLLVVDSLSPPGRAQSKEVEATKESSRPERPVFIKRSSTQAATLQHKKPACSVDAQIIGGSALSSQFILKQEVSTASSKGSTLKAGDRVKFVGDFPSNGPSPQVFPSRGPSYGCKGRVHIAFENNRSSKIGVRFEKPIPDGNDLGGLCENNHGFFCSANHLVLVDGSGGDDSSKAAINEIFEIASNLSKSGPLVLLIKDIEKGVSGNSEILKSKFGSLPQNVVVIGSHIQPDNRKEKTQPGSLLFTKFGGNQTALLDLAFPDNFTRLHDRSKETPKVMKQLNRLFPNKVTIQLPQDETLLSDWKQQLDRDIETMKAQSNVASIRLVLNKFGLDCSDLETLCIKDQALTTENVEKIIGWAISYHFMHSSEVSTKESKPVISAESVWYGFNILQGIQNENKSTKTSLKDVVTENEFEKKLLGDVIPPTDIGVSFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPSEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDTANRAKIMRVILAKEDLAPDVDLEALANMTDGYSGSDIKNLCVTAAHCPIREILEKEKKDRSFALAENKPLPGLCSSADIRPLKMEDFKYAHEQVCASVSSDSSNMNELLQWNDLYGEGGSRKKTSLSYFM 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02221 1232 Gene3D - 926 1205 IPR027417 -
Vifa3g02221 1232 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 410 1231 - -
Vifa3g02221 1232 SMART AAA_5 964 1101 IPR003593 GO:0016887
Vifa3g02221 1232 MobiDBLite consensus disorder prediction 1 29 - -
Vifa3g02221 1232 Gene3D - 120 229 - -
Vifa3g02221 1232 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 926 1102 - -
Vifa3g02221 1232 Pfam AAA+ lid domain 1121 1157 IPR041569 -
Vifa3g02221 1232 Gene3D - 1100 1194 - -
Vifa3g02221 1232 ProSitePatterns AAA-protein family signature. 1071 1090 IPR003960 GO:0005524|GO:0016887
Vifa3g02221 1232 Coils Coil 381 401 - -
Vifa3g02221 1232 SUPERFAMILY SMAD/FHA domain 121 214 IPR008984 GO:0005515
Vifa3g02221 1232 CDD RecA-like_ATAD1 931 1097 - -
Vifa3g02221 1232 MobiDBLite consensus disorder prediction 1 55 - -
Vifa3g02221 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 927 1206 IPR027417 -
Vifa3g02221 1232 MobiDBLite consensus disorder prediction 36 52 - -
Vifa3g02221 1232 Pfam ATPase family associated with various cellular activities (AAA) 968 1097 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02221 Vifa-Chr3 555134548 555145574 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02221 963 1168 Calmodulin-binding Proteins AT3G56690 35.238 8.77e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02221 - - gmx:100801477 1740.7