Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02220 ATGGTTGAAACCAGGCGCAGTTCGTCTTCCTCCAAACGTTCTCTTTCTTCTGCTCCTCCCTCTTCTTCTCCTTCAACCACCAAACGATCCAAGAAACAGGTCTCTGAGGATGTTTCATCCACCGCTAGCCCCTCACCGCTGGTCAACGAATCTGGTGAACAGAAGATACGGTTATCTGATCTGCAAGAAACGGCGTCGTTGAAGGCTGTTGATGGTGAGACTGAGAATAACAAGTCTGCTTCTGTTCTGGTGTCTTCTCCTCAGTGTCTAGAATCAGGTGGGATTACAGAGAAATCCAACGGGTTGCCGCCCTTAGCTCGGTCGAAGAAACGTTGCTTAAAATCGAGTCCTGAGATTGCTTGGGGGAGGCTCATTTCTCAATCTTCTGAGAATCCCCACGTGCCCATATCTGAACCTATCTACACTGTTGGTCAATGTCGTCAGTGTAATTTATGGCTTAAAGATCCCAATGTTAGTACTGTTTTGTGCAAATTGAGCCACATAGAGCATGGAGGTTCATCTGTTGCATTGCTGGAAGTCATAGGGAGTAAAGGTGAAGTGAAAGTTAACGGGAAGATATATGGGAAGAAATGCCGTCTTATTTTGACTGGAGGCGATGAAGTTGTCTTTGGTTTTTCCGGCAAGCATGCTTATATATTTCAGCAGCTCCTCGATAATATCTCTGCTGCCAATATTCCTCCTCCTGTGAGCATTTTCGAAACCCAGGGTGCTCCAATAATTGGAGCACAGATTGAAGCTAGACCTGGAGATCTGTCTGCTGTTGCTGGGGCTTCAATATTGACCTCTTTTTCTAATTTTAATGAAGATTTATCTCTCATTTCACCCCCTGCTAACACTGGCAAGAACACGCAGCAGAATACTGACGCTTTGTCACTACCTGCCGGCGATGGGGATGATAAGGCAAATGTTGACGTGAAGCACAACACCGTTAATAACGAACCAGATGGAGTTTTTTATGCTGAGGAAACTGGTTGTCCATCCTCTACCACTGTTAATGAAGATCCTAAGGTTGACGCTGTAGAAGTCAACGTCAGTGTTGATGCAGATGTTGGGAATATGACTGCTGCCTCCAGCAATTTGAGACCATTATTCTGTCCTGATTTAGATTTAAGTGGCAAGATTACCAAGATATTGGAAAAAAATAAGGAATTGAAGGAACGCCTTAAAAGTGTTGATACCCGAAATATATTGGCATCACCCAAGCAACAAGCTCTTAAAGATAGTTTACAGATGAAAATTCTCAATGCTGAGAATATCGATGTTTCATTTGAAAGTTTTCCATATTATCTTAGTGACACAACAAAGAATGTTTTGATTGCTTCTGCGTACATTCATTTGAAGTGCAATGGCTCTGAAAAATATGTTTCTGACCTTCCATCGTTGTCCCCACGGTTATTGTTATCTGGTCCTACAGGCTCAGAAATATATCAGGAGACTCTGTCCAAGGCACTTGCAAAGCATTTTGATGCGTGGCTACTAGTTGTGGACTCTCTTTCACCTCCTGGTCGGGCACAATCGAAGGAAGTTGAAGCTACTAAAGAAAGTTCAAGGCCTGAAAGACCTGTGTTTATTAAGAGAAGTAGTACTCAGGCTGCTACATTACAACATAAGAAACCGGCTTGTAGTGTTGATGCCCAAATTATAGGTGGATCCGCATTAAGTTCACAGTTTATACTGAAGCAAGAAGTTTCTACGGCATCCTCAAAAGGCAGTACTCTTAAAGCAGGTGATCGGGTAAAGTTTGTCGGTGACTTCCCTTCTAATGGCCCATCACCACAAGTTTTTCCGTCGAGGTTAAAACTCCTGTCTGCTACATTGAGCAGGGGACCAAGTTATGGCTGCAAGGGCAGAGTTCACATTGCTTTTGAAAACAACCGGTCTTCGAAAATTGGGGTTAGATTTGAGAAACCAATTCCAGATGGAAATGATCTTGGAGGCCTCTGCGAAAATAATCATGGCTTCTTTTGTTCTGCCAATCATTTAGTACTGGTAGATGGTTCTGGAGGGGATGACTCTAGCAAAGCTGCTATTAATGAAATCTTTGAGATTGCTTCTAATCTGAGTAAAAGTGGACCATTGGTGTTGTTGATTAAAGATATCGAAAAGGGTGTGTCTGGGAATTCAGAAATTTTGAAAAGTAAATTCGGAAGTTTGCCACAGAATGTTGTAGTAATTGGTTCACATATCCAACCGGACAATCGTAAGGAGAAGACACAACCTGGCAGCCTTCTGTTTACAAAATTTGGAGGCAATCAGACAGCACTGCTTGATCTTGCTTTTCCGGATAACTTTACTAGACTGCATGATAGGAGCAAAGAAACTCCCAAAGTCATGAAGCAACTCAATAGGCTTTTTCCAAACAAGGTTACAATACAGCTGCCTCAGGATGAGACTTTACTTTCTGATTGGAAGCAGCAGCTAGATCGTGACATAGAAACTATGAAAGCCCAGTCCAACGTTGCCAGCATTCGCCTAGTCCTCAACAAGTTTGGACTGGATTGTTCTGACCTTGAGACTCTTTGCATCAAAGATCAAGCTCTAACAACTGAAAATGTGGAGAAGATCATTGGTTGGGCCATAAGTTATCATTTTATGCATTCATCTGAAGTTTCTACCAAAGAATCAAAGCCTGTAATATCCGCAGAGAGCGTTTGGTATGGGTTTAACATTCTACAGGGCATTCAAAATGAGAACAAGAGCACAAAAACATCACTCAAGGACGTAGTTACTGAGAATGAATTTGAGAAAAAACTGCTTGGCGATGTTATTCCGCCAACTGATATTGGGGTCTCATTTGATGATATTGGAGCTTTAGAAAATGTAAAGGACACCTTAAAGGAGTTGGTTATGCTTCCTCTTCAAAGGCCTGAGTTATTTTGCAAAGGACAACTAACTAAGCCTTGCAAGGGAATCTTACTTTTTGGCCCTCCTGGCACTGGAAAAACCATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCGAATTTTATTAACATTTCCATGTCTAGCATTACTTCAAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGCGTTATTTTTGTTGATGAGGTTGATAGTATGTTAGGGAGACGTGAAAATCCCAGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAAAAGATAGAGAGCGTGTACTTGTTCTTGCTGCCACAAACAGACCTTTTGATCTCGATGAGGCGGTTATTAGGAGACTTCCGCGAAGATTGATGGTTAATTTGCCAGATACAGCAAACAGAGCGAAAATTATGAGAGTCATTTTAGCAAAAGAAGATTTGGCACCTGATGTTGATTTAGAAGCATTAGCAAATATGACTGACGGATACTCTGGAAGTGACATAAAGAATCTTTGTGTCACAGCTGCGCACTGTCCGATAAGAGAGATCTTGGAGAAGGAAAAGAAGGATAGAAGCTTTGCATTGGCTGAGAACAAACCTTTACCCGGTCTGTGTAGCAGTGCGGACATTCGTCCCTTAAAGATGGAAGATTTTAAATATGCACATGAGCAGGTGTGTGCAAGCGTGTCGTCGGATTCCTCAAATATGAACGAACTACTCCAATGGAATGACCTCTATGGAGAAGGTGGATCAAGGAAAAAGACATCTTTGAGCTATTTCATGTAA 3729 0.4216 MVETRRSSSSSKRSLSSAPPSSSPSTTKRSKKQVSEDVSSTASPSPLVNESGEQKIRLSDLQETASLKAVDGETENNKSASVLVSSPQCLESGGITEKSNGLPPLARSKKRCLKSSPEIAWGRLISQSSENPHVPISEPIYTVGQCRQCNLWLKDPNVSTVLCKLSHIEHGGSSVALLEVIGSKGEVKVNGKIYGKKCRLILTGGDEVVFGFSGKHAYIFQQLLDNISAANIPPPVSIFETQGAPIIGAQIEARPGDLSAVAGASILTSFSNFNEDLSLISPPANTGKNTQQNTDALSLPAGDGDDKANVDVKHNTVNNEPDGVFYAEETGCPSSTTVNEDPKVDAVEVNVSVDADVGNMTAASSNLRPLFCPDLDLSGKITKILEKNKELKERLKSVDTRNILASPKQQALKDSLQMKILNAENIDVSFESFPYYLSDTTKNVLIASAYIHLKCNGSEKYVSDLPSLSPRLLLSGPTGSEIYQETLSKALAKHFDAWLLVVDSLSPPGRAQSKEVEATKESSRPERPVFIKRSSTQAATLQHKKPACSVDAQIIGGSALSSQFILKQEVSTASSKGSTLKAGDRVKFVGDFPSNGPSPQVFPSRLKLLSATLSRGPSYGCKGRVHIAFENNRSSKIGVRFEKPIPDGNDLGGLCENNHGFFCSANHLVLVDGSGGDDSSKAAINEIFEIASNLSKSGPLVLLIKDIEKGVSGNSEILKSKFGSLPQNVVVIGSHIQPDNRKEKTQPGSLLFTKFGGNQTALLDLAFPDNFTRLHDRSKETPKVMKQLNRLFPNKVTIQLPQDETLLSDWKQQLDRDIETMKAQSNVASIRLVLNKFGLDCSDLETLCIKDQALTTENVEKIIGWAISYHFMHSSEVSTKESKPVISAESVWYGFNILQGIQNENKSTKTSLKDVVTENEFEKKLLGDVIPPTDIGVSFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPSEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDTANRAKIMRVILAKEDLAPDVDLEALANMTDGYSGSDIKNLCVTAAHCPIREILEKEKKDRSFALAENKPLPGLCSSADIRPLKMEDFKYAHEQVCASVSSDSSNMNELLQWNDLYGEGGSRKKTSLSYFM 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02220 1242 SMART AAA_5 974 1111 IPR003593 GO:0016887
Vifa3g02220 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 937 1216 IPR027417 -
Vifa3g02220 1242 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 410 1241 - -
Vifa3g02220 1242 MobiDBLite consensus disorder prediction 1 29 - -
Vifa3g02220 1242 CDD RecA-like_ATAD1 941 1107 - -
Vifa3g02220 1242 Gene3D - 1110 1204 - -
Vifa3g02220 1242 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 936 1112 - -
Vifa3g02220 1242 ProSitePatterns AAA-protein family signature. 1081 1100 IPR003960 GO:0005524|GO:0016887
Vifa3g02220 1242 Pfam ATPase family associated with various cellular activities (AAA) 978 1107 IPR003959 GO:0005524|GO:0016887
Vifa3g02220 1242 Coils Coil 381 401 - -
Vifa3g02220 1242 Pfam AAA+ lid domain 1131 1167 IPR041569 -
Vifa3g02220 1242 SUPERFAMILY SMAD/FHA domain 121 214 IPR008984 GO:0005515
Vifa3g02220 1242 MobiDBLite consensus disorder prediction 1 55 - -
Vifa3g02220 1242 Gene3D - 120 229 - -
Vifa3g02220 1242 MobiDBLite consensus disorder prediction 36 52 - -
Vifa3g02220 1242 Gene3D - 936 1215 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02220 Vifa-Chr3 555134548 555145574 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02220 973 1178 Calmodulin-binding Proteins AT3G56690 35.238 8.60e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02220 - - gmx:100801477 1732.61