Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02219 ATGGTTGAAACCAGGCGCAGTTCGTCTTCCTCCAAACGTTCTCTTTCTTCTGCTCCTCCCTCTTCTTCTCCTTCAACCACCAAACGATCCAAGGTCTCTGAGGATGTTTCATCCACCGCTAGCCCCTCACCGCTGGTCAACGAATCTGGTGAACAGAAGATACGGTTATCTGATCTGCAAGAAACGGCGTCGTTGAAGGCTGTTGATGGTGAGACTGAGAATAACAAGTCTGCTTCTGTTCTGGTGTCTTCTCCTCAGTGTCTAGAATCAGGTGGGATTACAGAGAAATCCAACGGGTTGCCGCCCTTAGCTCGGTCGAAGAAACGTTGCTTAAAATCGAGTCCTGAGATTGCTTGGGGGAGGCTCATTTCTCAATCTTCTGAGAATCCCCACGTGCCCATATCTGAACCTATCTACACTGTTGGTCAATGTCGTCAGTGTAATTTATGGCTTAAAGATCCCAATGTTAGTACTGTTTTGTGCAAATTGAGCCACATAGAGCATGGAGGTTCATCTGTTGCATTGCTGGAAGTCATAGGGAGTAAAGGTGAAGTGAAAGTTAACGGGAAGATATATGGGAAGAAATGCCGTCTTATTTTGACTGGAGGCGATGAAGTTGTCTTTGGTTTTTCCGGCAAGCATGCTTATATATTTCAGCAGCTCCTCGATAATATCTCTGCTGCCAATATTCCTCCTCCTGTGAGCATTTTCGAAACCCAGGGTGCTCCAATAATTGGAGCACAGATTGAAGCTAGACCTGGAGATCTGTCTGCTGTTGCTGGGGCTTCAATATTGACCTCTTTTTCTAATTTTAATGAAGATTTATCTCTCATTTCACCCCCTGCTAACACTGGCAAGAACACGCAGCAGAATACTGACGCTTTGTCACTACCTGCCGGCGATGGGGATGATAAGGCAAATGTTGACGTGAAGCACAACACCGTTAATAACGAACCAGATGGAGTTTTTTATGCTGAGGAAACTGGTTGTCCATCCTCTACCACTGTTAATGAAGATCCTAAGGTTGACGCTGTAGAAGTCAACGTCAGTGTTGATGCAGATGTTGGGAATATGACTGCTGCCTCCAGCAATTTGAGACCATTATTCTGTCCTGATTTAGATTTAAGTGGCAAGATTACCAAGATATTGGAAAAAAATAAGGAATTGAAGGAACGCCTTAAAAGTGTTGATACCCGAAATATATTGGCATCACCCAAGCAACAAGCTCTTAAAGATAGTTTACAGATGAAAATTCTCAATGCTGAGAATATCGATGTTTCATTTGAAAGTTTTCCATATTATCTTAGTGACACAACAAAGAATGTTTTGATTGCTTCTGCGTACATTCATTTGAAGTGCAATGGCTCTGAAAAATATGTTTCTGACCTTCCATCGTTGTCCCCACGGTTATTGTTATCTGGTCCTACAGGCTCAGAAATATATCAGGAGACTCTGTCCAAGGCACTTGCAAAGCATTTTGATGCGTGGCTACTAGTTGTGGACTCTCTTTCACCTCCTGGTCGGGCACAATCGAAGGAAGTTGAAGCTACTAAAGAAAGTTCAAGGCCTGAAAGACCTGTGTTTATTAAGAGAAGTAGTACTCAGGCTGCTACATTACAACATAAGAAACCGGCTTGTAGTGTTGATGCCCAAATTATAGGTGGATCCGCATTAAGTTCACAGTTTATACTGAAGCAAGAAGTTTCTACGGCATCCTCAAAAGGCAGTACTCTTAAAGCAGGTGATCGGGTAAAGTTTGTCGGTGACTTCCCTTCTAATGGCCCATCACCACAAGTTTTTCCGTCGAGGGGACCAAGTTATGGCTGCAAGGGCAGAGTTCACATTGCTTTTGAAAACAACCGGTCTTCGAAAATTGGGGTTAGATTTGAGAAACCAATTCCAGATGGAAATGATCTTGGAGGCCTCTGCGAAAATAATCATGGCTTCTTTTGTTCTGCCAATCATTTAGTACTGGTAGATGGTTCTGGAGGGGATGACTCTAGCAAAGCTGCTATTAATGAAATCTTTGAGATTGCTTCTAATCTGAGTAAAAGTGGACCATTGGTGTTGTTGATTAAAGATATCGAAAAGGGTGTGTCTGGGAATTCAGAAATTTTGAAAAGTAAATTCGGAAGTTTGCCACAGAATGTTGTAGTAATTGGTTCACATATCCAACCGGACAATCGTAAGGAGAAGACACAACCTGGCAGCCTTCTGTTTACAAAATTTGGAGGCAATCAGACAGCACTGCTTGATCTTGCTTTTCCGGATAACTTTACTAGACTGCATGATAGGAGCAAAGAAACTCCCAAAGTCATGAAGCAACTCAATAGGCTTTTTCCAAACAAGGTTACAATACAGCTGCCTCAGGATGAGACTTTACTTTCTGATTGGAAGCAGCAGCTAGATCGTGACATAGAAACTATGAAAGCCCAGTCCAACGTTGCCAGCATTCGCCTAGTCCTCAACAAGTTTGGACTGGATTGTTCTGACCTTGAGACTCTTTGCATCAAAGATCAAGCTCTAACAACTGAAAATGTGGAGAAGATCATTGGTTGGGCCATAAGTTATCATTTTATGCATTCATCTGAAGTTTCTACCAAAGAATCAAAGCCTGTAATATCCGCAGAGAGCGTTTGGTATGGGTTTAACATTCTACAGGGCATTCAAAATGAGAACAAGAGCACAAAAACATCACTCAAGGACGTAGTTACTGAGAATGAATTTGAGAAAAAACTGCTTGGCGATGTTATTCCGCCAACTGATATTGGGGTCTCATTTGATGATATTGGAGCTTTAGAAAATGTAAAGGACACCTTAAAGGAGTTGGTTATGCTTCCTCTTCAAAGGCCTGAGTTATTTTGCAAAGGACAACTAACTAAGCCTTGCAAGGGAATCTTACTTTTTGGCCCTCCTGGCACTGGAAAAACCATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCGAATTTTATTAACATTTCCATGTCTAGCATTACTTCAAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGCGTTATTTTTGTTGATGAGGTTGATAGTATGTTAGGGAGACGTGAAAATCCCAGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAAAAGATAGAGAGCGTGTACTTGTTCTTGCTGCCACAAACAGACCTTTTGATCTCGATGAGGCGGTTATTAGGAGACTTCCGCGAAGATTGATGGTTAATTTGCCAGATACAGCAAACAGAGCGAAAATTATGAGAGTCATTTTAGCAAAAGAAGATTTGGCACCTGATGTTGATTTAGAAGCATTAGCAAATATGACTGACGGATACTCTGGAAGTGACATAAAGAATCTTTGTGTCACAGCTGCGCACTGTCCGATAAGAGAGATCTTGGAGAAGGAAAAGAAGGATAGAAGCTTTGCATTGGCTGAGAACAAACCTTTACCCGGTCTGTGTAGCAGTGCGGACATTCGTCCCTTAAAGATGGAAGATTTTAAATATGCACATGAGCAGGTGTGTGCAAGCGTGTCGTCGGATTCCTCAAATATGAACGAACTACTCCAATGGAATGACCTCTATGGAGAAGGTGGATCAAGGAAAAAGACATCTTTGAGCTATTTCATGTAA 3693 0.4216 MVETRRSSSSSKRSLSSAPPSSSPSTTKRSKVSEDVSSTASPSPLVNESGEQKIRLSDLQETASLKAVDGETENNKSASVLVSSPQCLESGGITEKSNGLPPLARSKKRCLKSSPEIAWGRLISQSSENPHVPISEPIYTVGQCRQCNLWLKDPNVSTVLCKLSHIEHGGSSVALLEVIGSKGEVKVNGKIYGKKCRLILTGGDEVVFGFSGKHAYIFQQLLDNISAANIPPPVSIFETQGAPIIGAQIEARPGDLSAVAGASILTSFSNFNEDLSLISPPANTGKNTQQNTDALSLPAGDGDDKANVDVKHNTVNNEPDGVFYAEETGCPSSTTVNEDPKVDAVEVNVSVDADVGNMTAASSNLRPLFCPDLDLSGKITKILEKNKELKERLKSVDTRNILASPKQQALKDSLQMKILNAENIDVSFESFPYYLSDTTKNVLIASAYIHLKCNGSEKYVSDLPSLSPRLLLSGPTGSEIYQETLSKALAKHFDAWLLVVDSLSPPGRAQSKEVEATKESSRPERPVFIKRSSTQAATLQHKKPACSVDAQIIGGSALSSQFILKQEVSTASSKGSTLKAGDRVKFVGDFPSNGPSPQVFPSRGPSYGCKGRVHIAFENNRSSKIGVRFEKPIPDGNDLGGLCENNHGFFCSANHLVLVDGSGGDDSSKAAINEIFEIASNLSKSGPLVLLIKDIEKGVSGNSEILKSKFGSLPQNVVVIGSHIQPDNRKEKTQPGSLLFTKFGGNQTALLDLAFPDNFTRLHDRSKETPKVMKQLNRLFPNKVTIQLPQDETLLSDWKQQLDRDIETMKAQSNVASIRLVLNKFGLDCSDLETLCIKDQALTTENVEKIIGWAISYHFMHSSEVSTKESKPVISAESVWYGFNILQGIQNENKSTKTSLKDVVTENEFEKKLLGDVIPPTDIGVSFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPSEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDTANRAKIMRVILAKEDLAPDVDLEALANMTDGYSGSDIKNLCVTAAHCPIREILEKEKKDRSFALAENKPLPGLCSSADIRPLKMEDFKYAHEQVCASVSSDSSNMNELLQWNDLYGEGGSRKKTSLSYFM 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02219 1230 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 408 1229 - -
Vifa3g02219 1230 SMART AAA_5 962 1099 IPR003593 GO:0016887
Vifa3g02219 1230 Coils Coil 379 399 - -
Vifa3g02219 1230 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 924 1100 - -
Vifa3g02219 1230 CDD RecA-like_ATAD1 929 1095 - -
Vifa3g02219 1230 Gene3D - 1098 1192 - -
Vifa3g02219 1230 Gene3D - 118 227 - -
Vifa3g02219 1230 MobiDBLite consensus disorder prediction 1 53 - -
Vifa3g02219 1230 ProSitePatterns AAA-protein family signature. 1069 1088 IPR003960 GO:0005524|GO:0016887
Vifa3g02219 1230 SUPERFAMILY SMAD/FHA domain 119 212 IPR008984 GO:0005515
Vifa3g02219 1230 Pfam AAA+ lid domain 1119 1155 IPR041569 -
Vifa3g02219 1230 MobiDBLite consensus disorder prediction 1 50 - -
Vifa3g02219 1230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 925 1204 IPR027417 -
Vifa3g02219 1230 Pfam ATPase family associated with various cellular activities (AAA) 966 1095 IPR003959 GO:0005524|GO:0016887
Vifa3g02219 1230 Gene3D - 924 1203 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02219 Vifa-Chr3 555134548 555145574 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02219 961 1166 Calmodulin-binding Proteins AT3G56690 35.238 9.28e-31 129