Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02214 ATGTCTTCTTTAGATTCAACTTGGATTACATCTCTATCATGTTCACCTTCTTCAGGTTTATTTCCAATGGAAGTACCAACTCAGAAGGAGAAATCAACAAGCCTCTTATCACTTGATGGATTATTTTGGGTTGTTCAAGCAATAACTCAATTAGTCCTTGTAATCTTGATTATACATGTCAAAAGATTTGAAGCTGTTGTTCACCCTCTATCGCTTCGAGTTTTTTGGGTTGTGAATTTCGTTGTTGTTTCTCTGTTTGCTGCTTCTGGTGTTACGCGTTTGGTTTCTTTGGAGGGGAATGAGTCCTTTAGCTTTATGGTCGATGATGTTGTTTCTTTCATTTCACTATCGGTTTCGCTTTTTCTGCTTATTGTTGGTGTTAAGGGTTCCACTGGTGTTATTAAGTTGAGAGAAGAAACTCAAAGTGTTGGTGATAATGATGAAGAAACAAAACTATATGATCAAGGTTTGGATAAACCGGGTCTTACTACTGGTTTTGCTTCGGCTTCTCAGTTTTCTAAAACCTTTTGGATTTGGTTAAACCCTTTGTTGAGTAAAGGGTATGCGTCACCGCTTAATATCGATGAAGTTCCGTACCTTTCTCCACAGCATAGAGCTGAGAGGATGTCTGTTATCTTTGAGTCAAAATGGCCTAAATCGGAAGAGAGGTCGAAGTATCCGGTTAGAACCACGTTGCTTCGGTGTTTCTGGAAAGACATAATCTTCACTGCTTGTCTTGCTGTTATTAGGCTATCTGTTATGTTTGTTGGACCGGTTTTAATTCAAGATTTTGTTGATTTCACTTCTGGAAAAGGTAGTTCTGTGTATGAAGGTTACTATCTAGTGCTGATTCTTCTCGTAGCCAAGTTTATCGAAGTTTTAACAACTCATCATTTCAACTTCAACTCTCAGAAACTTGGAATGCTTATAAGATGCACTCTCATTACATCTTTATATAAAAAGGGGTTGAGGCTATCTTGTTCTGCAAGACAAGATCACGGTGTTGGTCCCATTGTGAATTACATGGCTGTTGATACGCAGCAGCTATCTGATATGATGCTTCAGTTACACGCGGTTTGGATGATGCCGTTTCAAGTTGGTATTGGTTTGTTTTTGCTTTATAATTGTCTCGGTGCTTCGGTGATCACCGCGTTTCTTTGCCTTCTACTTGTTCTCGTGTTTATCGTGGTGACAACTCGACAGAACAAAAACTACCAGTTTAAAGCTATGATAAGCCGTGATTCGAGAATGAAAGCTGTGAACGAGATGCTTAATTACATGAGGGTTATCAAGTTTCAGGCTTGGGAAGAGCATTTCAACAGTAGAATCTTAAGTTTCCGTGAGTCGGAATTCGGGTGGCTTTCAAAGTTTATGTACTCGATTTGTGGCAACATCATTGTGTTATGGAGCTCTCCTATGTTGATATCAACTCTCACTTTCGGTACCGCGCTTTTTCTTGGAGTTAAACTTGATGCAGGAACTGTTTTCACTACAACAACTGTGTTTAAGATCCTTCAGGAACCTATTAGGACTTTTCCTCAGTCAATGATATCTCTCTCACAAGCATTGGTATCACTTGGGAGGTTGGATAGGTACATGTCCAGTAGGGAATTGAATGATGATTCGGTTGAGAGAAATGTCGACTGTGACGGAGAAATTGCTGTGGATGTTCAAGATGGTACCTTTAGTTGGGATGACGATGGCCTAGAACAAGACCTGAAAAATATTCATTTGAAGGTTAATAAAGGGGAACTCACAGCTATTGTTGGCACTGTAGGATCTGGAAAATCTTCTCTTCTTGCATCGATTCTTGGCGAAATGCACAGAATTTCTGGAAAGGTTCAAGTTTGCGGGAGTACTGCTTATGTTGCGCAAACGTCTTGGATTCAAAACGGGACGATTGAAGAGAATATTCTCTTTGGTTTACCAATGAATAGACAGAAGTACAATGATGTTATCAGGGTCTGTTGTTTGGAGAAAGATTTAGAAATGATGGAATATGGGGATCAGACTGAGATTGGAGAGCGCGGCATCAACCTCAGCGGGGGTCAGAAGCAGCGTATACAGCTCGCAAGGGCTGTATACCAAGACTGTGACATATATCTTCTTGATGACGTCTTCAGCGCAGTTGATGCACATACTGGCACTGAAATATTTAAGGAATGTGTGAGGGGCGCTCTGAAAGGAAAGACCATAGTTCTTGTAACACACCAAGTAGACTTCTTACATAATGTCGATTGTATCGTGGTGATGAGAGAAGGAACAATAGTCCAATCGGGTCGGTACAATGACCTACTTGATTCTGGATTGGATTTCGGTATCCTGGTAGCAGCACACGAGACATCTATGGAACTTGTAGAACAAGGCGCGGCCATGCCTGGTGTACCGACAATAACTAAGTCAGCGTCTAATAACAACAGAGAAACCAATGGAGAAAGCAATTCTCTTGACCAACCTAAATCTGCTAAGGGAAGTTCTAAACTTGTCAAAGAAGAAGAAAGAGAAACCGGTAAAGTTAGCTTTAACATCTATAAACTCTACTGCACCGAGGCTTTTGGATGGATGGGAATTACGGCGGTACTCTTTCTTTCTGTGTTGTGGCAAGCATCTATGATGGCTAGTGATTATTGGTTGGCGTATCAAACATCGGTCAAGCGCGCTGAATTTTTCAATCCTTCGTTGTTTATTTCCGTCTATGCAATTATCAGTGTAGTTTCAGTTCTTATGATAGTTCTGAGATCCTATTCAGTCACAGTCTTTGGGTTAAAGACAGCACAGATTTTCTTCAAACAAATTCTTAATAGCATCTTGCATGCTCCAATGTCTTTCTACGACACTACTCCATCAGGCCGAATTCTAAGCAGGGCATCAACTGATCAGACAAATGTCGATATCTTCATCCCTTTGTTCATCAATTTTGTGGTGGCCATGTATATCACGGTCGTCAGCATCATCATAGTCACATGCCAAAATTCATGGCCGACAGCTTTCTTGCTGATTCCTCTTGTTTGGTTGAACCTTTGGTACCGGGGCTATTTTCTTTCTACTTCTCGCGAGTTAACTAGGCTGGATTCAATTACAAAAGCACCTGTGATTGTTCATTTCTCCGAAAGCATTTCCGGGGTAATGACGGTCCGTGCATTCAGAAAACAGAAGGAATTTAGTTTAGAAAACATCAGACGAGTAAATTCTAACTTGCGAATGGATTTCCACAACTTCAGTTCCAATGCGTGGTTGGGTTTCCGCTTAGAATTGCTTGGAAGTTTGATTTTCTGCATGTCTGCTTTGTTCATGATCATATTACCTAGCAATATAATAAAGCCAGAAAACGTTGGTTTATCTCTCTCCTATGGATTATCATTGAATTCGGTGATGTTCTGGGCCATATACATGAGCTGTTTCATTGAAAACAAAATGGTATCTGTTGAGAGAATAAAACAGTTCTCGAATATTCCATCAGAAGCTGCGTGGAACATTAAGGATCGCTCGCCTCCTCCGAATTGGCCTGGTCAAGGCCATGTTGATATCAAAGACTTGCAGGTCAGATATCGTCCGAACACTCCTTTGGTTCTTAAAGGCATTACTTTAAGCATTAGTGGAGGAGAAAAGATCGGCGTTGTTGGTCGAACCGGGAGTGGAAAATCAACTTTAATTCAAGTTTTCTTTAGGCTGGTGGAACCTACCGGAGGCAAAATAATCATCGACGGCATTGACATATCTGCCTTAGGACTTCATGATCTCAGGTCTCGATTTGGTATCATCCCTCAGGAGCCTGTCCTTTTCGAAGGTACCGTCAGAAGTAACATTGATCCAACTGGACAGTATACAGATGATGAGATATGGAAGAGTTTGGAGCGCTGTCAACTAAAAGACTCGGTCGCTTCAAAACCTGAGAAACTTGACTCATTGGTGGTTGACAATGGAGATAACTGGAGTGTGGGGCAGAGGCAGTTGCTATGTTTAGGGAGAGTTATGCTTAAGCAAAGCAGGCTGTTATTCATGGACGAGGCTACAGCTTCTGTCGATTCTCAAACCGATGCAGTAATTCAGAAGATCATCAGAGAGGATTTTTCAGCGCGTACCATCATCAGCATTGCTCATAGAATACCAACAGTGATGGACTGTGATCGAGTGTTAGTTGTAGATGCAGGGCGTGTGAAAGAATTCGATACACCTACAAACTTGCTCCAGAGGCAATCTTTGTTTGCAGCTTTGGTTCAAGAGTATGCCAACCGCTCGACTGGATTATAA 4251 0.4133 MSSLDSTWITSLSCSPSSGLFPMEVPTQKEKSTSLLSLDGLFWVVQAITQLVLVILIIHVKRFEAVVHPLSLRVFWVVNFVVVSLFAASGVTRLVSLEGNESFSFMVDDVVSFISLSVSLFLLIVGVKGSTGVIKLREETQSVGDNDEETKLYDQGLDKPGLTTGFASASQFSKTFWIWLNPLLSKGYASPLNIDEVPYLSPQHRAERMSVIFESKWPKSEERSKYPVRTTLLRCFWKDIIFTACLAVIRLSVMFVGPVLIQDFVDFTSGKGSSVYEGYYLVLILLVAKFIEVLTTHHFNFNSQKLGMLIRCTLITSLYKKGLRLSCSARQDHGVGPIVNYMAVDTQQLSDMMLQLHAVWMMPFQVGIGLFLLYNCLGASVITAFLCLLLVLVFIVVTTRQNKNYQFKAMISRDSRMKAVNEMLNYMRVIKFQAWEEHFNSRILSFRESEFGWLSKFMYSICGNIIVLWSSPMLISTLTFGTALFLGVKLDAGTVFTTTTVFKILQEPIRTFPQSMISLSQALVSLGRLDRYMSSRELNDDSVERNVDCDGEIAVDVQDGTFSWDDDGLEQDLKNIHLKVNKGELTAIVGTVGSGKSSLLASILGEMHRISGKVQVCGSTAYVAQTSWIQNGTIEENILFGLPMNRQKYNDVIRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGTEIFKECVRGALKGKTIVLVTHQVDFLHNVDCIVVMREGTIVQSGRYNDLLDSGLDFGILVAAHETSMELVEQGAAMPGVPTITKSASNNNRETNGESNSLDQPKSAKGSSKLVKEEERETGKVSFNIYKLYCTEAFGWMGITAVLFLSVLWQASMMASDYWLAYQTSVKRAEFFNPSLFISVYAIISVVSVLMIVLRSYSVTVFGLKTAQIFFKQILNSILHAPMSFYDTTPSGRILSRASTDQTNVDIFIPLFINFVVAMYITVVSIIIVTCQNSWPTAFLLIPLVWLNLWYRGYFLSTSRELTRLDSITKAPVIVHFSESISGVMTVRAFRKQKEFSLENIRRVNSNLRMDFHNFSSNAWLGFRLELLGSLIFCMSALFMIILPSNIIKPENVGLSLSYGLSLNSVMFWAIYMSCFIENKMVSVERIKQFSNIPSEAAWNIKDRSPPPNWPGQGHVDIKDLQVRYRPNTPLVLKGITLSISGGEKIGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIDISALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDDEIWKSLERCQLKDSVASKPEKLDSLVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQKIIREDFSARTIISIAHRIPTVMDCDRVLVVDAGRVKEFDTPTNLLQRQSLFAALVQEYANRSTGL 1416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02214 1416 FunFam ABC transporter C family member 5 820 1155 - -
Vifa3g02214 1416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 553 769 IPR027417 -
Vifa3g02214 1416 Pfam ABC transporter 573 706 IPR003439 GO:0005524
Vifa3g02214 1416 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 167 1409 - -
Vifa3g02214 1416 MobiDBLite consensus disorder prediction 795 831 - -
Vifa3g02214 1416 SUPERFAMILY ABC transporter transmembrane region 855 1154 IPR036640 GO:0005524|GO:0016020
Vifa3g02214 1416 FunFam ABC transporter C family member 10 224 537 - -
Vifa3g02214 1416 CDD ABC_6TM_ABCC_D2 857 1149 IPR044726 GO:0140359
Vifa3g02214 1416 CDD ABCC_MRP_domain2 1172 1392 - -
Vifa3g02214 1416 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 241 521 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g02214 1416 Gene3D ABC transporter type 1, transmembrane domain 215 532 IPR036640 GO:0005524|GO:0016020
Vifa3g02214 1416 Gene3D ABC transporter type 1, transmembrane domain 820 1155 IPR036640 GO:0005524|GO:0016020
Vifa3g02214 1416 FunFam ABC transporter C family member 4 538 795 - -
Vifa3g02214 1416 Gene3D - 1157 1408 IPR027417 -
Vifa3g02214 1416 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1174 1408 IPR003439 GO:0005524
Vifa3g02214 1416 SMART AAA_5 1200 1384 IPR003593 GO:0016887
Vifa3g02214 1416 SMART AAA_5 582 755 IPR003593 GO:0016887
Vifa3g02214 1416 CDD ABCC_MRP_domain1 555 755 - -
Vifa3g02214 1416 Gene3D - 533 791 IPR027417 -
Vifa3g02214 1416 SUPERFAMILY ABC transporter transmembrane region 232 537 IPR036640 GO:0005524|GO:0016020
Vifa3g02214 1416 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 555 778 IPR003439 GO:0005524
Vifa3g02214 1416 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 859 1137 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g02214 1416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1164 1407 IPR027417 -
Vifa3g02214 1416 Pfam ABC transporter transmembrane region 859 1110 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g02214 1416 Pfam ABC transporter transmembrane region 241 508 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g02214 1416 ProSitePatterns ABC transporters family signature. 680 694 IPR017871 GO:0005524|GO:0016887
Vifa3g02214 1416 MobiDBLite consensus disorder prediction 797 822 - -
Vifa3g02214 1416 CDD ABC_6TM_ABCC_D1 242 529 IPR044746 GO:0140359
Vifa3g02214 1416 FunFam ABC transporter C family member 3 1157 1408 - -
Vifa3g02214 1416 Pfam ABC transporter 1191 1339 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02214 Vifa-Chr3 553004908 553010585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02214 542 989 Calmodulin-binding Proteins AT2G36910 24.558 2.39e-26 115