Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02212 ATGAAATTCTGCAAAACTTATCAGGAATTCATGCGAGGCCAGGAGCAGAAGATGCTCCCCGTCGTTGGATTCAAGAAGCTCAAAAAGATCATGAAAACATGTCGACGATCTTCTCCGTATCATAGAACCTGCCCTGATCAATGCGCTGTGTGCGATGGGACCTTTTTCCCTTGCCTTCTCAATGAAATGTCAGAAATAGTGGGATGCTTTAATCAGCGTGCACAGAAATTGCTGGAACTGCATCTTGCTTCTGGATTCAAAAAGTACATCATCATATTGAAAGGAAAATCAAAAAGCAACCATTCTACTTTAGTTCATGAAGGCAAAGATCTAGTTGTCTATGCACTTATAAATGCTGTTGCAATTCGCAAAATACTCAAGAAATATGATAAGATTCATTATTCCAAACAAGGGCAATTATTCAAGTCACAAGCTCAGACTATGCATAAGGAAATTCTTCAGAGTCCCTGGCTTATTGAGCTTATGGCATTACATATCAACTTAAGGGAAACTAAAGCCAAGTCAAGGAAGTCATCTGCATTATTTGATGGATGTTATCTCACACTTAAGGATGGAAAACCGTCACTTGCTTGTGAGCTCTTTGACTCCATCAAAGTTGATATTGACTTGACTTGCTCTATATGTTTGGACACAGTGTTTGATCCAGTTTCTCTGTCTTGTGGCCACATATTCTGCTACAGTTGTGCTTGCTCATCTGCGTCTGTTACTATTGTTGATGGACTAAAGGAAGCACATTCTAAAGAGAAATGTCCTCTATGTCGATCGGCAGGAGTTTACCAAGGTTCTGTTCACTTGGAGGAATTAAACATTCTGTTAGGCCGAAGCTGCACAGAGTACTGGGAGGAAAGACTTCAAATGGAGAGGGTAGAGAGGGTGAAGCAAGCAAAGGAGCATTGGGAAACACAGTGTAGAGCATTCATGGGGATCTAA 951 0.409 MKFCKTYQEFMRGQEQKMLPVVGFKKLKKIMKTCRRSSPYHRTCPDQCAVCDGTFFPCLLNEMSEIVGCFNQRAQKLLELHLASGFKKYIIILKGKSKSNHSTLVHEGKDLVVYALINAVAIRKILKKYDKIHYSKQGQLFKSQAQTMHKEILQSPWLIELMALHINLRETKAKSRKSSALFDGCYLTLKDGKPSLACELFDSIKVDIDLTCSICLDTVFDPVSLSCGHIFCYSCACSSASVTIVDGLKEAHSKEKCPLCRSAGVYQGSVHLEELNILLGRSCTEYWEERLQMERVERVKQAKEHWETQCRAFMGI 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02212 316 Pfam Zinc finger, C3HC4 type (RING finger) 209 262 - -
Vifa3g02212 316 ProSiteProfiles SPX domain profile. 1 143 IPR004331 -
Vifa3g02212 316 ProSitePatterns Zinc finger RING-type signature. 227 236 IPR017907 -
Vifa3g02212 316 SMART ring_2 212 260 IPR001841 -
Vifa3g02212 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 316 IPR033326 -
Vifa3g02212 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 314 IPR013083 -
Vifa3g02212 316 SUPERFAMILY RING/U-box 205 263 - -
Vifa3g02212 316 CDD SPX_BAH1-like 2 139 - -
Vifa3g02212 316 CDD RING-HC_BAH1-like 202 275 - -
Vifa3g02212 316 ProSiteProfiles Zinc finger RING-type profile. 212 261 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02212 Vifa-Chr3 552986758 552989087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02212 209 262 C3H Transcription Factor Family AT4G28270 42.373 2.74e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02212 K16275 - gmx:100803060 533.487