Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02172 ATGTGTGGCGGTGCTATCATCGCTGACTTCATTCCTCGCCGTGGAGGCCGCCGCCTTACTGCCTCGGAGCTCTGGCCTAACTCTTTCGGCCAACAGCTTGACTCCTCCTCGGACTTCGGTTTTCCTGATCAACTACCACCCATTACTCTCAAAAGATCAGACCCTCCTAAAGTTAATGAACGAGTTGAAAAGCCTGTGAAAAAACAGAGGAAAAACCTCTACAGAGGAATCCGACAGCGTCCATGGGGAAAATGGGCTGCAGAGATTCGTGATCCCAGAAAAGGTGTTCGTGTTTGGCTTGGTACTTTCAACACTGCTGAAGAAGCTGCTAGAGCTTACGACAAAGAAGCTCGAAAAATTCGAGGTAAAAAAGCTAAGGTTAATTTCCCCAACGAAGATGATGCATATTCTGTTCAAACTCGTCGTCCACCACCTATTCGACCACCGAGTCCAAACCCGAATCATTCTCTCTATCATCAACAACAATATCCAAAGAATCTGAACCTGGAGTTTGGTTATGATCTGAACCGAACTGAACCGTTTATAATATCTGGTTCTGGTGGTGATGAGAATTCTGTATATGGGTCTGGTTCATGTTCTGAGGTTGGTTACTCTGTACTAGAGTTCGGTTCCACTCGAAATGAAAATGGTTATTTCGGTGGTGTTGTGAATGAACATGAAAAAGAGAAAGAGAAAGCGAAAGCGAAAGCGAAAGAATCAAATGAACAAGAAGCACGTGCTGAAGCTGAAGCGGCGAAGAATGAAGTTCAAGAGTTATCTGATGAATTGATGGCGTACGAGGATTACATGAAGTTTTATCAGATTCCGTACTATGATGGACAATCGATGCCACCGAATATTGTTCAGGAGCATGTTGTTGGGGATTTATGGAGCTTTGATTGA 903 0.443 MCGGAIIADFIPRRGGRRLTASELWPNSFGQQLDSSSDFGFPDQLPPITLKRSDPPKVNERVEKPVKKQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEDDAYSVQTRRPPPIRPPSPNPNHSLYHQQQYPKNLNLEFGYDLNRTEPFIISGSGGDENSVYGSGSCSEVGYSVLEFGSTRNENGYFGGVVNEHEKEKEKAKAKAKESNEQEARAEAEAAKNEVQELSDELMAYEDYMKFYQIPYYDGQSMPPNIVQEHVVGDLWSFD 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02172 300 PANTHER DNA-BINDING DOMAIN 57 254 IPR044808 GO:0003700|GO:0009873
Vifa3g02172 300 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Vifa3g02172 300 Coils Coil 223 269 - -
Vifa3g02172 300 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Vifa3g02172 300 FunFam Ethylene-responsive transcription factor 2 72 131 - -
Vifa3g02172 300 CDD AP2 74 131 IPR001471 GO:0003700|GO:0006355
Vifa3g02172 300 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Vifa3g02172 300 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Vifa3g02172 300 MobiDBLite consensus disorder prediction 130 153 - -
Vifa3g02172 300 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Vifa3g02172 300 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Vifa3g02172 300 Pfam AP2 domain 74 122 IPR001471 GO:0003700|GO:0006355
Vifa3g02172 300 MobiDBLite consensus disorder prediction 226 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02172 Vifa-Chr3 542471545 542472522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02172 1 131 AP2-EREBP Transcription Factor Family AT3G16770 55.147 1.05e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa3g02172 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02172 K09286 - gmx:100819416 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02172 3 542471545 542472522 Vifa3g02172 3 542471545 542472522 ECH