Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02163 ATGGCGGCATTTTCGTTTTCAGTGGCGTCTGTTGTTGAGGATGTTCTTCAACAACATGGTACTCGTCTCAAGGATCTTGATTTGGAATCTAGAAAGTCAGAAGAAGCTGCCTTGAGAAGATATGAAGCGGCGGGGTGGTTGAGAAAAATGGCTGGAGTTGTTGCCGCAAAAGATTTACCAGCAGAGCCTTCTGAGGAAGAGTTTAGGCTTGGTTTGAGGAGTGGGATCATTCTTTGCAATGTTCTTAACAAGGTTCAACCTGGTGCTGTGTCCAAGGTTGTGGAGAGTCCGGTTGATTCTGGCCTAATTCCCGATGGAGCACCGTTGTCCGCATTTCAGTATTTTGAAAATGTTAGGAACTTTCAAGTCGCGGTTCAGGAAATTGGAATTCCAACCTTTGAGGCTTCTGATCTAGAACAAGGAGGAAAATCGTCGAGGATTGTGAACAGTGTATTGGCCCTTAAATCCTATAGTGAATGGAAACAAACTGGGGCTAATGGTGTGTGGAAATTTGGTGGAACTGTTAAACCTGCAAGCACTGCAAAATCTTTTGTGAGAAAAAACTCTGAGCCATTTACCAATTCCTTGTCAAGAACCTCTTCGATAAATGAAAAATCTATGACTTCTCTTACCTCTGATGTCGAGTCTAATAAAATGTCTAGCTCTCATTCTTTAGGTATGCTTGTTCGTGCAATGCTATTCGATAAGAAGCCGGATGAAGTTCCAACGTTGGTTGAATCTGTTTTGACTAAAGTCGTAGAGGAGTTTGAGCATCGCATTGCAAACCAGGATGAACAGATAAAAACAACTTCAAGAGGTTCGTTACCTCAAAGCGATGGACCCTTAGCAAAGTTTACTATGGCACGTAAAAAGGTGGATAACAAGAATCTTATGGTAACCAAGAAAGAGGAGACCAACCATAAAAACCATGTGGCTGATGAGGAATCACGGAAAAAAGTTCTGAAGCAGCAAATGCTCTTTGATCAACGGCAAAGAGATATTCAAGAATTGAAATATACAGTTCAAACAACCAAAGCTGGTATGCAGTTCATGCAAATGAAATTTCATGAGGAGTTCTCCAATTTAGGTATGCACATTCATGGCTTAGCTCATGCTGCTTCTGGATATCATAGAGTTCTTGAAGAAAATCGCAAACTATACAATGAAGTCCAGGATCTTAAAGGAAGTATTAGGGTATACTGTCGAGTAAGACCTTTCTTATCTGGACAACCAAATCATATGAGTACTGTGGAGAACATAGAAGATGGAGTTATCACGATTAATGTTCCCTCAAAGAATGGGAAAGCGCGCAGATCCTTCAACTTCAACAAGGTTTTTGGACCATCCGCAGCCCAAGGGGAGGTATTCGCTGATATGCAGCCACTCATTAGGTCTGTTCTTGATGGTTTTAATGTTTGCATATTTGCTTATGGCCAAACAGGATCGGGAAAAACTTTCACCATGACCGGGCCGAAAGAGATCACAGAAAAAAGCCAAGGTGTAAATTACAGGGCTCTGAGTGATCTGTTTTTTACGGCGAATCAAAGAAAAGACACTTTTCGCTATGATGTTTCTGTTCAAATGATTGAAATTTATAATGAACAAGTCAGAGATCTATTGACTTCCGATGGATCAAACAAAAGATTAGAAATTCGTAGTAACTCTCAAAGAGGGCTCAGTGTACCAGATGCAAGCCTTGTTCAAGTATCATCAACAAATGATGTTATTGAACTAATGAACCTGGGCCACAAGAACCGTGCTGTTGGAGCAACGGCACTTAATGACCGTAGTAGCCGATCTCACAGTTGCTTGACTGTTCATGTTCAAGGAAGAGACTTGACATCTGGAGCTGTCCTACGGGGATGCATGCATCTGGTTGACTTGGCAGGAAGTGAGAGGGTCGACAAATCTGAGGCGACAGGTGATAGACTGAAAGAGGCACAGCATATTAACAAATCTCTTTCAGCTTTGGGTGATGTCGTTGCTTCCCTTGCTCAGAAAAACCAACATGTCCCTTATAGAAACAGCAAACTCACACAATTACTCCAAGATTCACTTGGAGGACAGGCCAAGACATTAATGTTTGTTCACATTAGTCCAGAGGCCAATGCTATTGGAGAAACAATTAGCACACTGAAATTTGCAGAAAGAGTTGCTACGGTTGAACTTGGCGCTGCTCGAGTAAACAAGGATGGGGCAGATGTCAAAGACCTCAAAGAACAGATTGCCAACCTTAAGGCGGCATTGGCTAGAAATGAAGGAAATTCAGAATATTCTTTGTCCGGCAGCTCTGGAAAATATAGGACAACAGCTAGTGAACTATCACCCTATCGTGCAGTTCAACGAGGTGCAGATATTGTAGATGATCCCTTTGAATGCCGGCAACCAATGGTTAATGTAGGCAACTTAGCTCTTCAGAGTAATACCGCATCGAGACAAAGAACTCAGTGCTTTGATTTTGATGAGATATTAACAAATTCCCCATCCTGGCCCCCGGTGAATAGTCCTGTTCAAAATTGCGTGGAAGATGATAAAGAAACAGGTACAGGAGAGTGGGTTGATAAGGTCATGGTAAACAAGCTAGATGTGAACAAAACTGGCAACATGTTAGGGTGTTGGGAAGCAGATAACGGAAACTTATCCGAGGAATTTTATCAGAAATATCTTCCAGATTCTTCCAAAGTATACTCGGAACGATCCTATAATATGTTCATGAGAGGCAACCAATTTAACATTGCTGGCTCAGATGACACTGATGATGTTGATGCTGCAACCAGTGATTCCTCAGAACATGACTTGCTTTGGCAATTTAATCATTCCAAAGTTACAAACATAGCCAATGGAAATGAATCAAAGGGTAGAAGATTAGTCTCAAAGTCAGCAAAAAGTCCTGAATTGAGCAGGAATAGTATTCATTCTTCTACCGCTCCTTCACCTTCACGGAAACAAACAAGTGGCGTCTCACATCGGACACCAACAAGGCAACCAGCTCCGGTTGACATGAAACGTAAAACTGGTTCTAGAAAATGA 3030 0.4185 MAAFSFSVASVVEDVLQQHGTRLKDLDLESRKSEEAALRRYEAAGWLRKMAGVVAAKDLPAEPSEEEFRLGLRSGIILCNVLNKVQPGAVSKVVESPVDSGLIPDGAPLSAFQYFENVRNFQVAVQEIGIPTFEASDLEQGGKSSRIVNSVLALKSYSEWKQTGANGVWKFGGTVKPASTAKSFVRKNSEPFTNSLSRTSSINEKSMTSLTSDVESNKMSSSHSLGMLVRAMLFDKKPDEVPTLVESVLTKVVEEFEHRIANQDEQIKTTSRGSLPQSDGPLAKFTMARKKVDNKNLMVTKKEETNHKNHVADEESRKKVLKQQMLFDQRQRDIQELKYTVQTTKAGMQFMQMKFHEEFSNLGMHIHGLAHAASGYHRVLEENRKLYNEVQDLKGSIRVYCRVRPFLSGQPNHMSTVENIEDGVITINVPSKNGKARRSFNFNKVFGPSAAQGEVFADMQPLIRSVLDGFNVCIFAYGQTGSGKTFTMTGPKEITEKSQGVNYRALSDLFFTANQRKDTFRYDVSVQMIEIYNEQVRDLLTSDGSNKRLEIRSNSQRGLSVPDASLVQVSSTNDVIELMNLGHKNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGAVLRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVVASLAQKNQHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEANAIGETISTLKFAERVATVELGAARVNKDGADVKDLKEQIANLKAALARNEGNSEYSLSGSSGKYRTTASELSPYRAVQRGADIVDDPFECRQPMVNVGNLALQSNTASRQRTQCFDFDEILTNSPSWPPVNSPVQNCVEDDKETGTGEWVDKVMVNKLDVNKTGNMLGCWEADNGNLSEEFYQKYLPDSSKVYSERSYNMFMRGNQFNIAGSDDTDDVDAATSDSSEHDLLWQFNHSKVTNIANGNESKGRRLVSKSAKSPELSRNSIHSSTAPSPSRKQTSGVSHRTPTRQPAPVDMKRKTGSRK 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02163 1009 Coils Coil 728 755 - -
Vifa3g02163 1009 Pfam Calponin homology (CH) domain 40 159 IPR001715 GO:0005515
Vifa3g02163 1009 SMART kinesin_4 394 729 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g02163 1009 PANTHER KINESIN-LIKE PROTEIN KLP-3 44 958 IPR027640 GO:0003777|GO:0007018
Vifa3g02163 1009 Pfam Kinesin motor domain 402 720 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g02163 1009 MobiDBLite consensus disorder prediction 194 218 - -
Vifa3g02163 1009 PRINTS Kinesin heavy chain signature 591 608 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g02163 1009 PRINTS Kinesin heavy chain signature 469 490 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g02163 1009 PRINTS Kinesin heavy chain signature 671 692 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g02163 1009 PRINTS Kinesin heavy chain signature 622 640 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g02163 1009 FunFam Kinesin-like protein KIN-14I isoform A 391 763 - -
Vifa3g02163 1009 Gene3D - 24 181 IPR036872 -
Vifa3g02163 1009 MobiDBLite consensus disorder prediction 962 992 - -
Vifa3g02163 1009 SUPERFAMILY Calponin-homology domain, CH-domain 40 171 IPR036872 -
Vifa3g02163 1009 SMART ch_5 39 157 IPR001715 GO:0005515
Vifa3g02163 1009 Gene3D Kinesin motor domain 391 761 IPR036961 -
Vifa3g02163 1009 ProSiteProfiles Calponin homology (CH) domain profile. 37 159 IPR001715 GO:0005515
Vifa3g02163 1009 FunFam Kinesin-like protein KIN-14I isoform A 24 176 - -
Vifa3g02163 1009 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 753 IPR027417 -
Vifa3g02163 1009 CDD CH_AtKIN14-like 39 156 - -
Vifa3g02163 1009 CDD KISc_C_terminal 394 723 - -
Vifa3g02163 1009 MobiDBLite consensus disorder prediction 945 1009 - -
Vifa3g02163 1009 ProSiteProfiles Kinesin motor domain profile. 396 721 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02163 Vifa-Chr3 538591884 538596924 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02163 283 721 Calmodulin-binding Proteins AT5G65930 36.188 1.23e-77 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02163 K10406 - gmx:100801279 1624.37