Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02145 ATGGGAGGAGAAGTTGTTTTGTTGATTGATGATTTGAAATCACTTTCTGGTTTTCCTCGTTGTAGAATATGTCATGAAGAAGAACTTGAAAGCTTCAAAAGCTTAGAAGCTCCTTGTGCTTGTTCTGGAACAGTTAAGTTTGCTCATAGAGATTGCATTCAAACATGGTGCAATGAAAAAGGAAACACAACTTGTGAAATTTGCTTACAACAGTATGAGCCTGGATATACAACACCACCACCAAAGAAATGTAAAAATTCAAATGAAGTAATGACCATTAGATATAGCCTTGAAATATCAAGGAGAGAAGAAGAAGAATTAAATAGAAGAATAGTTGAATATGAAGAAGGTGTAAGAAGAGAAAACAATTACGTTGAATGCACCTATGCTGCTGATAGAAGCGCGTTTTGTTGTCGATCACTGGCTTTAGCTTTTACTCTCATATTACTTCTAAGACATCTTTTTGCTTTGCTTACAAGTGGAATGGAAGATTACCCATTTACAATTCTTACAATTTTTATACTAAGGGCCAGTGGAATTATTATACCTATGTTCATAATTATTAGGACTATAGGTGCCATTCATAAAAGTATCCATCGTCATTATCATCATCAGGATTCTGATGAGGACTCATCAATGTCTGATGGAGATGATGAAGAAAATGGAACACCACATATTGCAATTTTAAGACATTCACATTATTAG 705 0.3433 MGGEVVLLIDDLKSLSGFPRCRICHEEELESFKSLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTTPPPKKCKNSNEVMTIRYSLEISRREEEELNRRIVEYEEGVRRENNYVECTYAADRSAFCCRSLALAFTLILLLRHLFALLTSGMEDYPFTILTIFILRASGIIIPMFIIIRTIGAIHKSIHRHYHHQDSDEDSSMSDGDDEENGTPHIAILRHSHY 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02145 234 FunFam E3 ubiquitin-protein ligase MARCH4 10 78 - -
Vifa3g02145 234 Coils Coil 97 117 - -
Vifa3g02145 234 ProSiteProfiles Zinc finger RING-type profile. 21 68 IPR001841 -
Vifa3g02145 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 78 IPR013083 -
Vifa3g02145 234 SUPERFAMILY RING/U-box 19 73 - -
Vifa3g02145 234 ProSiteProfiles Zinc finger RING-CH-type profile. 13 75 IPR011016 GO:0008270
Vifa3g02145 234 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 20 201 IPR033275 -
Vifa3g02145 234 CDD RING_CH-C4HC3_MARCH 21 68 - -
Vifa3g02145 234 SMART ringv_2 20 69 IPR011016 GO:0008270
Vifa3g02145 234 Pfam RING-variant domain 21 68 IPR011016 GO:0008270
Vifa3g02145 234 Pfam Protein of unknown function (DUF3675) 74 191 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02145 Vifa-Chr3 532618082 532619485 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02145 21 68 C3H Transcription Factor Family AT2G37950 44.898 2.72e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02145 - - gmx:100797029 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02145 3 532618082 532619485 Vifa3g02145 3 532618082 532619485 ECH