Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02144 ATGGCATTGCTTCGACCATCATCTTTCATAATCTTATTGGCTCATGGTGCACTAATAGTTCTTGCAGCATTGACACCATGTTGGTATGTGATGGTCACACATATCGAAAAACGCACCAATTTGCATTCAAAAAATATTGTGTCACATTTGCAATCCGAAATTGAGTACTCTGCTCAATTGTTGCAACCATTAAAATCATCATCAACAAATTTATCTAGATTATTGAGTTCAACCATTAATCCTACTAATATCACTTTCTTTGATATTAACACCAAGGTGGCTCCATTATTATTTCAAGCATTGAAGACAATTCCTCACTTAACACAAATTTCATTCATAGGAACTCAAGGTCTATTTTTCACATACTATAATGATGGTGATCAAGTTCTAACAATGTACTCTAATTCTTCTATAGTTGATGCATTGAATAAAACTATATATTATATTCAACCCGTAAATCGTGACACGGGAGAGATTTTTGGAGAAGCCTTAATATCGAATACAACTGTTAATATCAACACGAGTTTGACATACGATACAAACGATACTCTATATGAACTTGCATCATTAGGAATGAAGTTGAACAATTTTAGTGAACTTTTATTCATCAACTCGGCTAGAATAAATAAAATAGGCGTGTTATCAGTTGGATTTTCGGTGAAAACCATAGCTGATTATATCACTCGGGTTGTCGATCGTCAAGGGACGAAATCGTATTTGGCTACCAAAGATGGAAATGTGATTGCAAAAGGGAATCAAAATATTGGTTTGAAGATTTTGAATGATAGTGTTTTATTACAATCTTTGAATGCTAATGGAGACATAATAAGGAATGAAGGAAGTGTATCTTGCAAGAATCAAGTTTATGATTCTAGTTTGAATATTCAAGATTCTCAATATTTTGTTCATTGCTATCCTATTGATATTTTCGGAATAGAATCGGTTTATGTGATGGTTATTCCGAAAAATGAAATTTCTGATTTCGATCCAAGATATAGAGAAAAGGGATTGATACTCTTGATTGCAATGATGGTGGTAACATTTATAGCTATCTCGAGTTTCGTATTCATGAACATTGGAGTAACAAGAAGAGAAATGCAATTATGTGCATCATTGATAAAACAAATGGAAGCAACGGAACAAGCGGAGAGAAAAAATATGAACAAGAGTCTTGCTTTTGCGAGTGCTAGCCATGATCTTCGCGCTTATCTTGCAGGCCTAATCGGTTTGATTGAAATGTCTTCAAAATTAGTTCTCTCTAATGCAGACACGGATTTGAATTTGAAATCGCGTTCTGAATTGGAAACGAATTTCAAACAAATGGATAATTGCGCGCAAGACTTGCTAGGACTATTGAATTCTATACTCGACACGAGCAAAATGGAGGCAGGAAAAATGCAACTGGAAGAAGAGGAATTTGATTTGTCTTATCTTGTTGAAGATGTGGTTGATTTGTATTATCCAATGGCAATGAAGAAAGGTGTGGAACTTGTGTTGGACTCTTGTAATGGTTCGGTTTTTAAGTATTCGCGCGTGAAAGGCGATAGGAGAAAATTGAAGCAGGTTTTGTGTAACTTGCTTAGCAATGCTGTTAAATTTACCGACGAAGGACACATAACGGTTAGAGCGTGGGCGCAGAAATCGACATTGCAGAAGTCGATAATCAAGAGTAACCAAAATAGTGTTATGAAGCCTTTTTCTTGGATGTTTTTTAAGAAAAATGATAAAGAGTTTGAAGATATAGAAGCAGTGAGTTCGATTCAACAAGATGCTTGTTTGATGGATTTCGTATTTGAAGTGGATGACACTGGGAAAGGAATTCCGAAAGAGAATTATAAGTCGGTGTTCGAGAATTATGTTCAAGTTAAAGAGAATGCTGTTGGTCAAGTTGGAACTGGCTTAGGACTTGGAATTGTGCAATCACTGGTACGTTTGATGCATGGAGACATTGAAATTGTGGACAAAGAAGTTGGCAAAAAAGGAACATGTTTCAAGTTCAATGTGCTTCTCGCTTTATGTGAAAACGAGATGGTAACTTATGGTTTAAGGGAAGGTTTTGAATATGGATCAACCTCGGGCGACAAAAATCAAGTTCCGGAGAAAAGATTAGTTCATAATGTTAGTTCTAGTTCGAACATTCGACCTTTGAGTCCAAGGTTACAAATTTGTCCCTCGTCTAGTCCTAAGACCGAGTCTTCACATGTTATTCTTTACCTTAATGATGAAGAAAGAAGAAGAACTTCGCAGATGTTTATTGAGAGTTTAGGGATCAAAGTTAAAGTTGTGAAGAATAGGAAACATCTCATAGATACTCTCAAGAAGGTAAAGAAACAAAATGGTCACCAAATTAGTGACCAAAGTTCTTCAGAATCTTCGGAATTAGGTTCTCGTTGTACGTCTTATAACTCTTCTTATAGTAGAGCTTCTACAAAAATTCCTATGAGAGCTTTGGATGGAGCTGAATACGTATCTTCAATGTTCAAGATGACAAACAACGGAGCTGCGCCGAGTTTTGTTTTGATTATCATCGATGCAAACGCGGGACAGTTTTCTAAGCTTTGTAACATTGTGTCGAACTTTAAGAAAGATCTTGTCAATCCTAGTAAAGTTGTTTGGTTGGAAAAGCCTTTTGCAAGTAGCGTCGATTTCAAAACAATTGATCGAGATGATATTGTGATATCAAAACCGTTTCATGGAACTAGATTGTTTCAAGTTATAAAGTTTCTTCCCGAGTTTGGTGGGAATTGGAAAAGCAATTCTAGCACTAAAGCTTTACGAGAATTAAGATCACAAGTATCTTCTCATGACGAAAGCGTGAATCTAAATACGAAATTTTATAAGGAGAAGAAAATTCATGTTGATCAAAATGAAATACAAGAATGTGGAGAGTCTGATAATTCTAAACCTCTAAGTGGAAAGAAATTTATGATTGTTGATGATTCTCCAATGTTGAGAAAGATTGCTATGGCTACGTTAAGTTCTCTTGGTGTGACTAGTATTGATCAATGTGAGAATGGTAAAGAGGCTTTGAAACAAGTTGAACAAGGTTTGAAAAAGGATTTTCCTAATCCTCCTTATGATTACATCTTAATGGATTGTCAGATGCCGGAGATGGATGGATTTGAGGCAACAAGAAAGATAAGAGAAATGGAGAAAGAATATGGTGTGCACATTTCTATCATTGCATTATCTGCTGAGATTGATAAATTGACAACAGAGACTAGAATGGATTTTCACATAACCAAGCCTATTAAGAAAGAGCATTTACTTAAAGCTATTAACTACATAGAAAATAGTGAGATATAA 3306 0.3536 MALLRPSSFIILLAHGALIVLAALTPCWYVMVTHIEKRTNLHSKNIVSHLQSEIEYSAQLLQPLKSSSTNLSRLLSSTINPTNITFFDINTKVAPLLFQALKTIPHLTQISFIGTQGLFFTYYNDGDQVLTMYSNSSIVDALNKTIYYIQPVNRDTGEIFGEALISNTTVNINTSLTYDTNDTLYELASLGMKLNNFSELLFINSARINKIGVLSVGFSVKTIADYITRVVDRQGTKSYLATKDGNVIAKGNQNIGLKILNDSVLLQSLNANGDIIRNEGSVSCKNQVYDSSLNIQDSQYFVHCYPIDIFGIESVYVMVIPKNEISDFDPRYREKGLILLIAMMVVTFIAISSFVFMNIGVTRREMQLCASLIKQMEATEQAERKNMNKSLAFASASHDLRAYLAGLIGLIEMSSKLVLSNADTDLNLKSRSELETNFKQMDNCAQDLLGLLNSILDTSKMEAGKMQLEEEEFDLSYLVEDVVDLYYPMAMKKGVELVLDSCNGSVFKYSRVKGDRRKLKQVLCNLLSNAVKFTDEGHITVRAWAQKSTLQKSIIKSNQNSVMKPFSWMFFKKNDKEFEDIEAVSSIQQDACLMDFVFEVDDTGKGIPKENYKSVFENYVQVKENAVGQVGTGLGLGIVQSLVRLMHGDIEIVDKEVGKKGTCFKFNVLLALCENEMVTYGLREGFEYGSTSGDKNQVPEKRLVHNVSSSSNIRPLSPRLQICPSSSPKTESSHVILYLNDEERRRTSQMFIESLGIKVKVVKNRKHLIDTLKKVKKQNGHQISDQSSSESSELGSRCTSYNSSYSRASTKIPMRALDGAEYVSSMFKMTNNGAAPSFVLIIIDANAGQFSKLCNIVSNFKKDLVNPSKVVWLEKPFASSVDFKTIDRDDIVISKPFHGTRLFQVIKFLPEFGGNWKSNSSTKALRELRSQVSSHDESVNLNTKFYKEKKIHVDQNEIQECGESDNSKPLSGKKFMIVDDSPMLRKIAMATLSSLGVTSIDQCENGKEALKQVEQGLKKDFPNPPYDYILMDCQMPEMDGFEATRKIREMEKEYGVHISIIALSAEIDKLTTETRMDFHITKPIKKEHLLKAINYIENSEI 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02144 1101 SMART REC_2 973 1093 IPR001789 GO:0000160
Vifa3g02144 1101 MobiDBLite consensus disorder prediction 781 797 - -
Vifa3g02144 1101 SUPERFAMILY CheY-like 971 1096 IPR011006 -
Vifa3g02144 1101 CDD HisKA 386 460 IPR003661 GO:0000155|GO:0007165
Vifa3g02144 1101 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 514 670 IPR003594 -
Vifa3g02144 1101 ProSiteProfiles Histidine kinase domain profile. 395 672 IPR005467 -
Vifa3g02144 1101 PANTHER TWO-COMPONENT HISTIDINE KINASE 45 1094 - -
Vifa3g02144 1101 MobiDBLite consensus disorder prediction 774 797 - -
Vifa3g02144 1101 CDD REC_hyHK_CKI1_RcsC-like 975 1093 - -
Vifa3g02144 1101 Gene3D - 466 675 IPR036890 -
Vifa3g02144 1101 SMART HKATPase_4 514 672 IPR003594 -
Vifa3g02144 1101 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 376 466 IPR036097 GO:0000155|GO:0007165
Vifa3g02144 1101 PRINTS Bacterial sensor protein C-terminal signature 614 624 IPR004358 GO:0016310|GO:0016772
Vifa3g02144 1101 PRINTS Bacterial sensor protein C-terminal signature 596 610 IPR004358 GO:0016310|GO:0016772
Vifa3g02144 1101 PRINTS Bacterial sensor protein C-terminal signature 630 648 IPR004358 GO:0016310|GO:0016772
Vifa3g02144 1101 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 453 667 IPR036890 -
Vifa3g02144 1101 Gene3D - 371 465 - -
Vifa3g02144 1101 Pfam Response regulator receiver domain 976 1094 IPR001789 GO:0000160
Vifa3g02144 1101 ProSiteProfiles Response regulatory domain profile. 974 1097 IPR001789 GO:0000160
Vifa3g02144 1101 Gene3D - 950 1099 - -
Vifa3g02144 1101 SMART HisKA_10 388 464 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02144 Vifa-Chr3 532026528 532030426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02144 5 1098 Histidine Kinase Gene Family AT2G47430 38.442 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa3g02144 HATPase_c 6.4e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02144 - - cam:101504256 1224.15