LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g02134	ATGGCTTCTGGTGACCGTCGTGTAAGTTCAGGTTCAGATGGCGGAGATCCACTCCTGGAAGAGGAGAGGAAGAGAAAGCGTATGCAGTCGAACCGCGAATCTGCGAGGCGGTCAAGAATGAGGAAACAGAAGCAAATTGAAGATCTGACTGAAGAGGTCGGCAGATTGAAAAGCGATAACGATCGTCTTAAAGAGAACATCAAGGTGACGGAGGACGCCTATGCTGAAAAGGAGGCGGAAAACAATGTCGTTAGGGCACAGATAATGGAGCTTTGGGAACGATTGCGATCTCTGAACTCCATGGTGAAAAATGCTGAAGATGTTAATGGTCCATCTAATGACATGGCTCTTTATGGCGATCCTCTTCTCAAGCCTTGGTTTCTACCTCATTTGAATTTTTCTCTCATTGCTTCAAATGATATGTTGAGGCATTGA	435	0.4575	MASGDRRVSSGSDGGDPLLEEERKRKRMQSNRESARRSRMRKQKQIEDLTEEVGRLKSDNDRLKENIKVTEDAYAEKEAENNVVRAQIMELWERLRSLNSMVKNAEDVNGPSNDMALYGDPLLKPWFLPHLNFSLIASNDMLRH	144

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g02134	144	MobiDBLite	consensus disorder prediction	1	53	-	-
	Vifa3g02134	144	Pfam	bZIP transcription factor	21	81	IPR004827	GO:0003700\|GO:0006355
	Vifa3g02134	144	FunFam	BZIP transcription factor	21	72	-	-
	Vifa3g02134	144	CDD	bZIP_plant_GBF1	24	75	IPR045314	GO:0003700\|GO:0006355
	Vifa3g02134	144	Gene3D	-	21	78	-	-
	Vifa3g02134	144	SMART	brlzneu	19	83	IPR004827	GO:0003700\|GO:0006355
	Vifa3g02134	144	SUPERFAMILY	Leucine zipper domain	23	74	IPR046347	GO:0003700\|GO:0006355
	Vifa3g02134	144	Coils	Coil	18	80	-	-
	Vifa3g02134	144	PANTHER	BZIP TRANSCRIPTION FACTOR 44	10	131	-	-
	Vifa3g02134	144	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	26	41	IPR004827	GO:0003700\|GO:0006355
	Vifa3g02134	144	MobiDBLite	consensus disorder prediction	16	53	-	-
	Vifa3g02134	144	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	21	68	IPR004827	GO:0003700\|GO:0006355

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g02134	1	142	bZIP Transcription Factor Family	AT3G62420	46.207	2.15e-32	110

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Vifa3g02134		bZIP_1	7.4e-13	CL0018

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g02134	K25786		-	gmx:780550	151.754