Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02131 ATGGTTTCCAAACCTAACGATTATCCTCTAATTCTTCATCATAAATTAATTGAAGAGGCGGGGGATGATGATGCTGTTGGAACCTTGTCCGCCAAGATAGATCAGTTGAAAAAGCAAATCCAGGCAGAGAGAATTCAGTTCATTGCTGAAAAACTTCAGAGGAACCAGAAGAAGCTACAATGCCATATTTCAGGAATAATGTCAGCAGTATCAACCAGGGAGGACTCTTCACAGACGGAAGAAAACAGGACATGTGCAATTCTTTCTTCAAGAATGGACCGTCCTTTATGTAAATTCGATGGTTTTAACCATGTTTCAGGAGACAAAGACCACAGCAATCAAGACATATCATCTGTTACAAGCATCAGGATTCCACGTATTGAAAGATTGCCACCATATACATCGTGGATATTTTTGGATAGGAATCAGAGAATGGCTGAAGATCAGTCAGTCGTTGGAAGAAGACGAATCTACTATGATCAACGTGGAAGTGAAGCATTGATATGTAGTGACAGTGAGGAGGAATTAACAGAACCTGAGGAAGTAAAACATGAATTTTGTGAGGCTGAAGACCGTATTTTATGGATGGCATTTGAGGAACATGGGTTAAATGAGGAGGTACTGAATGTTGTTTGCAAGCATGTTGGGGGCACCACTTTAGAAATCCAGGAGAGGTACAAAAGTATCAAGGAAAATACTACTGGTAGGTTGGACCAGCATTCAAAAAGCTTAGGAGAACATGAGTCTCCTATGAGCATGTATCTAGAGAAAACCCTGAGTGATGCACTAGATTCTCTTGATAACCTTTTTTGTCGCCGATGCCTGATTTTCGACTGTCGACTGCATGGCTGTTCTCAACCTTTGATATGTCCTAGTGAAAAGCAAACTGTTTGGTCTGAGCCTGAAGGCAATAGGAAACCATGCGGTGATCAGTGTTACCTCCAGCAGTTAAATGTTGTAAAAAATTTGCCAAAAGATACAACTCCTGGATCTCTTTGGGATAAGAAAATTACAATTGTAGAGGAGACAAATGGGACAATGTCACCACCTTCCGCTGCCAAAGAACCTGGGAATCAGAGTACTAGACTTCCAACAAGACTTGATTGCCATGGATATCTTAATTTGAATGACAATGTCTCAGAAAATTCAGGGAAACGGAAAGTCACAAATCAGTTAGACTCAAGATTGCCTCCTGATTCTCAGAATTCTATTTTGGACAAATCTGTTGAACGCTCTTCGAATAAAATAAAAGTTCCTTCTAGCACTTGCCACAGTGAGAATGACAAAGGTGTTTTGAATGGATCCAAAGTTGTCACAAATGAGACAGAACTTCAAAAGCCGTTGGATTCAATGGAAGGACAGGTTGATGAAATGGTAGGTTTCTCAGATTGGAAACCTCTAGAGAAAGAGTTATACTTGAAGGGAGTGGAAATGTTTGGCAGAAACAGTTGCCTCATAGCTAGGAACTTACTTTCTGGTTTGAAGACTTGCATGGAAATATCTAGTTACATGCATGATCGAGGAGTGTCAATGCCCCACAGATCCATCGCTGCAGCTAGTTCAATCATGGATGACGAGGGAAAATTTGACACAGAGTGCACAGACCAAGATATGCCATCTAGGTCACGGTTGCTGAGAAAAAGAGGCAAAACAAGGAATATACGCCTTGTGAATGTCAATCAATGTGTGGAAAGGATTGTTCTTGTGTTAATGGTGGGACATGCTGTGAAAAATACTGTGGTTGTTCGAAGAGCTGCAAAAATCGTTTCAGAGGATGCCATTGTGCCAAGAGTCAATGCAGAAGTCGACAATGTCCATGCTTTGCTGCTGGACGTGAATGTGATCCAGACGTCTGTCGAAACTGTTGGCTGTGGGGATGGCACATTGGGGGAGCCACCGCGGCGTGGAGAAGGTCAATGCGGAAATATGAGACTTCTTTTAAGGCAACAACAGAGGATTCTCTTGGGGAAGTCGGATGTTGCAGGATGGGGAGCCTTCTTGAAGAATCCTGTTAACAAAAATGATTACCTAGGAGAGTACACAGGTGAATTGATCTCACACAGAGAAGCTGATAAGCGTGGAAAAATATATGATCGTGCGAACTCATCTTTCCTTTTCGATTTGAATGAGCAGTTTGTTCTTGATGCTTATCGGAAAGGAGACAAGTTGAAATTTGCAAACCACTCATCAAACCCCAACTGCCATGCAAAGGTGATTTTAGTTGCTGGAGATCATCGGGTTGGCATATTTGCCAAGGAACACATTGATGCCAGTGAGGAGCTCTTCTATGATTATCGCTATGGTCCAGATCAAGCACCTCCATGGGCTCGTAAACCTGAGGGTTCCAAGAGAGACGAATCAGAAGGTAGGGCAAAGAAACATCAATCCCATTGA 2394 0.4219 MVSKPNDYPLILHHKLIEEAGDDDAVGTLSAKIDQLKKQIQAERIQFIAEKLQRNQKKLQCHISGIMSAVSTREDSSQTEENRTCAILSSRMDRPLCKFDGFNHVSGDKDHSNQDISSVTSIRIPRIERLPPYTSWIFLDRNQRMAEDQSVVGRRRIYYDQRGSEALICSDSEEELTEPEEVKHEFCEAEDRILWMAFEEHGLNEEVLNVVCKHVGGTTLEIQERYKSIKENTTGRLDQHSKSLGEHESPMSMYLEKTLSDALDSLDNLFCRRCLIFDCRLHGCSQPLICPSEKQTVWSEPEGNRKPCGDQCYLQQLNVVKNLPKDTTPGSLWDKKITIVEETNGTMSPPSAAKEPGNQSTRLPTRLDCHGYLNLNDNVSENSGKRKVTNQLDSRLPPDSQNSILDKSVERSSNKIKVPSSTCHSENDKGVLNGSKVVTNETELQKPLDSMEGQVDEMVGFSDWKPLEKELYLKGVEMFGRNSCLIARNLLSGLKTCMEISSYMHDRGVSMPHRSIAAASSIMDDEGKFDTECTDQDMPSRSRLLRKRGKTRNIRLVNVNQCVERIVLVLMVGHAVKNTVVVRRAAKIVSEDAIVPRVNAEVDNVHALLLDVNVIQTSVETVGCGDGTLGEPPRRGEGQCGNMRLLLRQQQRILLGKSDVAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNEQFVLDAYRKGDKLKFANHSSNPNCHAKVILVAGDHRVGIFAKEHIDASEELFYDYRYGPDQAPPWARKPEGSKRDESEGRAKKHQSH 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02131 797 CDD SET_EZH 651 767 - -
Vifa3g02131 797 Gene3D SET domain 603 768 IPR046341 -
Vifa3g02131 797 ProSiteProfiles SET domain profile. 651 766 IPR001214 GO:0005515
Vifa3g02131 797 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 18 797 IPR025778 GO:0031519
Vifa3g02131 797 MobiDBLite consensus disorder prediction 771 797 - -
Vifa3g02131 797 MobiDBLite consensus disorder prediction 380 413 - -
Vifa3g02131 797 SMART set_7 651 772 IPR001214 GO:0005515
Vifa3g02131 797 SUPERFAMILY SET domain 638 769 IPR046341 -
Vifa3g02131 797 Pfam SET domain 662 765 IPR001214 GO:0005515
Vifa3g02131 797 MobiDBLite consensus disorder prediction 777 797 - -
Vifa3g02131 797 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 26 555 IPR045318 GO:0006338|GO:0042054
Vifa3g02131 797 Coils Coil 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02131 Vifa-Chr3 528807027 528815356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02131 640 769 C2H2 Transcription Factor Family AT2G23740 24.490 1.37e-08 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa3g02131 SET 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02131 - - gmx:100808730 698.738