Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02130 ATGGTTTCCAAACCTAACGATTATCCTCTAATTCTTCATCATAAATTAATTGAAGAGGCGGGGGATGATGATGCTGTTGGAACCTTGTCCGCCAAGATAGATCAGTTGAAAAAGCAAATCCAGGCAGAGAGAATTCAGTTCATTGCTGAAAAACTTCAGAGGAACCAGAAGAAGCTACAATGCCATATTTCAGGAATAATGTCAGCAGTATCAACCAGGGAGGACTCTTCACAGACGGAAGAAAACAGGACATGTGCAATTCTTTCTTCAAGAATGGACCGTCCTTTATGTAAATTCGATGGTTTTAACCATGTTTCAGGAGACAAAGACCACAGCAATCAAGACATATCATCTGTTACAAGCATCAGGATTCCACGTATTGAAAGATTGCCACCATATACATCGTGGATATTTTTGGATAGGAATCAGAGAATGGCTGAAGATCAGTCAGTCGTTGGAAGAAGACGAATCTACTATGATCAACGTGGAAGTGAAGCATTGATATGTAGTGACAGTGAGGAGGAATTAACAGAACCTGAGGAAGTAAAACATGAATTTTGTGAGGCTGAAGACCGTATTTTATGGATGGCATTTGAGGAACATGGGTTAAATGAGGAGGTACTGAATGTTGTTTGCAAGCATGTTGGGGGCACCACTTTAGAAATCCAGGAGAGGTACAAAAGTATCAAGGAAAATACTACTGGTAGGTTGGACCAGCATTCAAAAAGCTTAGGAGAACATGAGTCTCCTATGAGCATGTATCTAGAGAAAACCCTGAGTGATGCACTAGATTCTCTTGATAACCTTTTTTGTCGCCGATGCCTGATTTTCGACTGTCGACTGCATGGCTGTTCTCAACCTTTGATATGTCCTAGTGAAAAGCAAACTGTTTGGTCTGAGCCTGAAGGCAATAGGAAACCATGCGGTGATCAGTGTTACCTCCAGCAGTTAAATGTTGTAAAAAATTTGCCAAAAGATACAACTCCTGGATCTCTTTGGGATAAGAAAATTACAATTGTAGAGGAGACAAATGGGACAATGTCACCACCTTCCGCTGCCAAAGAACCTGGGAATCAGAGTACTAGACTTCCAACAAGACTTGATTGCCATGGATATCTTAATTTGAATGACAATGTCTCAGAAAATTCAGGGAAACGGAAAGTCACAAATCAGTTAGACTCAAGATTGCCTCCTGATTCTCAGAATTCTATTTTGGACAAATCTGTTGAACGCTCTTCGAATAAAATAAAAGTTCCTTCTAGCACTTGCCACAGTGAGAATGACAAAGGTGTTTTGAATGGATCCAAAGTTGTCACAAATGAGACAGAACTTCAAAAGCCGTTGGATTCAATGGAAGGACAGGTTGATGAAATGGTAGGTTTCTCAGATTGGAAACCTCTAGAGAAAGAGTTATACTTGAAGGGAGTGGAAATGTTTGGCAGAAACAGTTGCCTCATAGCTAGGAACTTACTTTCTGGTTTGAAGACTTGCATGGAAATATCTAGTTACATGCATGATCGAGGAGTGTCAATGCCCCACAGATCCATCGCTGCAGCTAGTTCAATCATGGATGACGAGGGAAAATTTGACACAGAGTGCACAGACCAAGATATGCCATCTAGGTCACGGTTGCTGAGAAAAAGAGGCAAAACAAGGAAGTTTAAATATTCTTGGAAGTCTGCTGGTCACCCAACAACATGGAAAAGAATTGCTGATGGGAAAAACCAATCTTGCAAGCAGTATACGCCTTGTGAATGTCAATCAATGTGTGGAAAGGATTGTTCTTGTGTTAATGGTGGGACATGCTGTGAAAAATACTGTGGTTGTTCGAAGAGCTGCAAAAATCGTTTCAGAGGATGCCATTGTGCCAAGAGTCAATGCAGAAGTCGACAATGTCCATGCTTTGCTGCTGGACGTGAATGTGATCCAGACGTCTGTCGAAACTGTTGGGTTAGCTGTGGGGATGGCACATTGGGGGAGCCACCGCGGCGTGGAGAAGGTCAATGCGGAAATATGAGACTTCTTTTAAGGCAACAACAGAGGATTCTCTTGGGGAAGTCGGATGTTGCAGGATGGGGAGCCTTCTTGAAGAATCCTGTTAACAAAAATGATTACCTAGGAGAGTACACAGGTGAATTGATCTCACACAGAGAAGCTGATAAGCGTGGAAAAATATATGATCGTGCGAACTCATCTTTCCTTTTCGATTTGAATGAGCAGTTTGTTCTTGATGCTTATCGGAAAGGAGACAAGTTGAAATTTGCAAACCACTCATCAAACCCCAACTGCCATGCAAAGGTGATTTTAGTTGCTGGAGATCATCGGGTTGGCATATTTGCCAAGGAACACATTGATGCCAGTGAGGAGCTCTTCTATGATTATCGCTATGGTCCAGATCAAGCACCTCCATGGGCTCGTAAACCTGAGGGTTCCAAGAGAGACGAATCAGAAGGTAGGGCAAAGAAACATCAATCCCATTGA 2481 0.4212 MVSKPNDYPLILHHKLIEEAGDDDAVGTLSAKIDQLKKQIQAERIQFIAEKLQRNQKKLQCHISGIMSAVSTREDSSQTEENRTCAILSSRMDRPLCKFDGFNHVSGDKDHSNQDISSVTSIRIPRIERLPPYTSWIFLDRNQRMAEDQSVVGRRRIYYDQRGSEALICSDSEEELTEPEEVKHEFCEAEDRILWMAFEEHGLNEEVLNVVCKHVGGTTLEIQERYKSIKENTTGRLDQHSKSLGEHESPMSMYLEKTLSDALDSLDNLFCRRCLIFDCRLHGCSQPLICPSEKQTVWSEPEGNRKPCGDQCYLQQLNVVKNLPKDTTPGSLWDKKITIVEETNGTMSPPSAAKEPGNQSTRLPTRLDCHGYLNLNDNVSENSGKRKVTNQLDSRLPPDSQNSILDKSVERSSNKIKVPSSTCHSENDKGVLNGSKVVTNETELQKPLDSMEGQVDEMVGFSDWKPLEKELYLKGVEMFGRNSCLIARNLLSGLKTCMEISSYMHDRGVSMPHRSIAAASSIMDDEGKFDTECTDQDMPSRSRLLRKRGKTRKFKYSWKSAGHPTTWKRIADGKNQSCKQYTPCECQSMCGKDCSCVNGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGTLGEPPRRGEGQCGNMRLLLRQQQRILLGKSDVAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNEQFVLDAYRKGDKLKFANHSSNPNCHAKVILVAGDHRVGIFAKEHIDASEELFYDYRYGPDQAPPWARKPEGSKRDESEGRAKKHQSH 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02130 826 MobiDBLite consensus disorder prediction 380 429 - -
Vifa3g02130 826 SUPERFAMILY SET domain 553 799 IPR046341 -
Vifa3g02130 826 SMART CXC_2 615 652 IPR033467 -
Vifa3g02130 826 CDD SET_EZH 680 796 - -
Vifa3g02130 826 SMART set_7 680 801 IPR001214 GO:0005515
Vifa3g02130 826 Pfam CXC domain 619 650 IPR041355 -
Vifa3g02130 826 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 26 825 IPR045318 GO:0006338|GO:0042054
Vifa3g02130 826 FunFam Putative histone-lysine N-methyltransferase EZH2 581 797 - -
Vifa3g02130 826 Pfam SET domain 691 794 IPR001214 GO:0005515
Vifa3g02130 826 ProSiteProfiles CXC domain profile. 567 666 IPR026489 -
Vifa3g02130 826 ProSiteProfiles SET domain profile. 680 795 IPR001214 GO:0005515
Vifa3g02130 826 MobiDBLite consensus disorder prediction 800 826 - -
Vifa3g02130 826 Gene3D SET domain 581 797 IPR046341 -
Vifa3g02130 826 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 18 826 IPR025778 GO:0031519
Vifa3g02130 826 MobiDBLite consensus disorder prediction 806 826 - -
Vifa3g02130 826 Coils Coil 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02130 Vifa-Chr3 528807027 528815356 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02130 669 798 C2H2 Transcription Factor Family AT2G23740 24.490 1.36e-08 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa3g02130 SET 1.1e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02130 3 528807027 528815356 Vifa3g02130 3 528807027 528815356 ECH
Vifa5g03547 5 1156403544 1156414460 Vifa3g02130 3 528807027 528815356 PCT