Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02129 ATGGTTTCCAAACCTAACGATTATCCTCTAATTCTTCATCATAAATTAATTGAAGAGGCGGGGGATGATGATGCTGTTGGAACCTTGTCCGCCAAGATAGATCAGTTGAAAAAGCAAATCCAGGCAGAGAGAATTCAGTTCATTGCTGAAAAACTTCAGAGGAACCAGAAGAAGCTACAATGCCATATTTCAGGAATAATGTCAGCAGTATCAACCAGGGAGGACTCTTCACAGACGGAAGAAAACAGGACATGTGCAATTCTTTCTTCAAGAATGGACCGTCCTTTATGTAAATTCGATGGTTTTAACCATGTTTCAGGAGACAAAGACCACAGCAATCAAGACATATCATCTGTTACAAGCATCAGGATTCCACGTATTGAAAGATTGCCACCATATACATCGTGGATATTTTTGGATAGGAATCAGAGAATGGCTGAAGATCAGTCAGTCGTTGGAAGAAGACGAATCTACTATGATCAACGTGGAAGTGAAGCATTGATATGTAGTGACAGTGAGGAGGAATTAACAGAACCTGAGGAAGTAAAACATGAATTTTGTGAGGCTGAAGACCGTATTTTATGGATGGCATTTGAGGAACATGGGTTAAATGAGGAGGTACTGAATGTTGTTTGCAAGCATGTTGGGGGCACCACTTTAGAAATCCAGGAGAGGTACAAAAGTATCAAGGAAAATACTACTGGTAGGTTGGACCAGCATTCAAAAAGCTTAGGAGAACATGAGTCTCCTATGAGCATGTATCTAGAGAAAACCCTGAGTGATGCACTAGATTCTCTTGATAACCTTTTTTGTCGCCGATGCCTGATTTTCGACTGTCGACTGCATGGCTGTTCTCAACCTTTGATATGTCCTAGTGAAAAGCAAACTGTTTGGTCTGAGCCTGAAGGCAATAGGAAACCATGCGGTGATCAGTGTTACCTCCAGTTAAATGTTGTAAAAAATTTGCCAAAAGATACAACTCCTGGATCTCTTTGGGATAAGAAAATTACAATTGTAGAGGAGACAAATGGGACAATGTCACCACCTTCCGCTGCCAAAGAACCTGGGAATCAGAGTACTAGACTTCCAACAAGACTTGATTGCCATGGATATCTTAATTTGAATGACAATGTCTCAGAAAATTCAGGGAAACGGAAAGTCACAAATCAGTTAGACTCAAGATTGCCTCCTGATTCTCAGAATTCTATTTTGGACAAATCTGTTGAACGCTCTTCGAATAAAATAAAAGTTCCTTCTAGCACTTGCCACAGTGAGAATGACAAAGGTGTTTTGAATGGATCCAAAGTTGTCACAAATGAGACAGAACTTCAAAAGCCGTTGGATTCAATGGAAGGACAGGTTGATGAAATGGTAGGTTTCTCAGATTGGAAACCTCTAGAGAAAGAGTTATACTTGAAGGGAGTGGAAATGTTTGGCAGAAACAGTTGCCTCATAGCTAGGAACTTACTTTCTGGTTTGAAGACTTGCATGGAAATATCTAGTTACATGCATGATCGAGGAGTGTCAATGCCCCACAGATCCATCGCTGCAGCTAGTTCAATCATGGATGACGAGGGAAAATTTGACACAGAGTGCACAGACCAAGATATGCCATCTAGGTCACGGTTGCTGAGAAAAAGAGGCAAAACAAGGAAGTTTAAATATTCTTGGAAGTCTGCTGGTCACCCAACAACATGGAAAAGAATTGCTGATGGGAAAAACCAATCTTGCAAGCAGTATACGCCTTGTGAATGTCAATCAATGTGTGGAAAGGATTGTTCTTGTGTTAATGGTGGGACATGCTGTGAAAAATACTGTGGTTGTTCGAAGAGCTGCAAAAATCGTTTCAGAGGATGCCATTGTGCCAAGAGTCAATGCAGAAGTCGACAATGTCCATGCTTTGCTGCTGGACGTGAATGTGATCCAGACGTCTGTCGAAACTGTTGGGTTAGCTGTGGGGATGGCACATTGGGGGAGCCACCGCGGCGTGGAGAAGGTCAATGCGGAAATATGAGACTTCTTTTAAGGCAACAACAGAGGATTCTCTTGGGGAAGTCGGATGTTGCAGGATGGGGAGCCTTCTTGAAGAATCCTGTTAACAAAAATGATTACCTAGGAGAGTACACAGGTGAATTGATCTCACACAGAGAAGCTGATAAGCGTGGAAAAATATATGATCGTGCGAACTCATCTTTCCTTTTCGATTTGAATGAGCAGTTTGTTCTTGATGCTTATCGGAAAGGAGACAAGTTGAAATTTGCAAACCACTCATCAAACCCCAACTGCCATGCAAAGGTGATTTTAGTTGCTGGAGATCATCGGGTTGGCATATTTGCCAAGGAACACATTGATGCCAGTGAGGAGCTCTTCTATGATTATCGCTATGGTCCAGATCAAGCACCTCCATGGGCTCGTAAACCTGAGGGTTCCAAGAGAGACGAATCAGAAGGTAGGGCAAAGAAACATCAATCCCATTGA 2478 0.4209 MVSKPNDYPLILHHKLIEEAGDDDAVGTLSAKIDQLKKQIQAERIQFIAEKLQRNQKKLQCHISGIMSAVSTREDSSQTEENRTCAILSSRMDRPLCKFDGFNHVSGDKDHSNQDISSVTSIRIPRIERLPPYTSWIFLDRNQRMAEDQSVVGRRRIYYDQRGSEALICSDSEEELTEPEEVKHEFCEAEDRILWMAFEEHGLNEEVLNVVCKHVGGTTLEIQERYKSIKENTTGRLDQHSKSLGEHESPMSMYLEKTLSDALDSLDNLFCRRCLIFDCRLHGCSQPLICPSEKQTVWSEPEGNRKPCGDQCYLQLNVVKNLPKDTTPGSLWDKKITIVEETNGTMSPPSAAKEPGNQSTRLPTRLDCHGYLNLNDNVSENSGKRKVTNQLDSRLPPDSQNSILDKSVERSSNKIKVPSSTCHSENDKGVLNGSKVVTNETELQKPLDSMEGQVDEMVGFSDWKPLEKELYLKGVEMFGRNSCLIARNLLSGLKTCMEISSYMHDRGVSMPHRSIAAASSIMDDEGKFDTECTDQDMPSRSRLLRKRGKTRKFKYSWKSAGHPTTWKRIADGKNQSCKQYTPCECQSMCGKDCSCVNGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGTLGEPPRRGEGQCGNMRLLLRQQQRILLGKSDVAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNEQFVLDAYRKGDKLKFANHSSNPNCHAKVILVAGDHRVGIFAKEHIDASEELFYDYRYGPDQAPPWARKPEGSKRDESEGRAKKHQSH 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02129 825 SMART CXC_2 614 651 IPR033467 -
Vifa3g02129 825 Gene3D SET domain 580 796 IPR046341 -
Vifa3g02129 825 SMART set_7 679 800 IPR001214 GO:0005515
Vifa3g02129 825 ProSiteProfiles SET domain profile. 679 794 IPR001214 GO:0005515
Vifa3g02129 825 Pfam SET domain 690 793 IPR001214 GO:0005515
Vifa3g02129 825 CDD SET_EZH 679 795 - -
Vifa3g02129 825 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 18 825 IPR025778 GO:0031519
Vifa3g02129 825 MobiDBLite consensus disorder prediction 799 825 - -
Vifa3g02129 825 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 26 824 IPR045318 GO:0006338|GO:0042054
Vifa3g02129 825 SUPERFAMILY SET domain 552 798 IPR046341 -
Vifa3g02129 825 Pfam CXC domain 618 649 IPR041355 -
Vifa3g02129 825 MobiDBLite consensus disorder prediction 379 411 - -
Vifa3g02129 825 ProSiteProfiles CXC domain profile. 566 665 IPR026489 -
Vifa3g02129 825 MobiDBLite consensus disorder prediction 805 825 - -
Vifa3g02129 825 FunFam Putative histone-lysine N-methyltransferase EZH2 580 796 - -
Vifa3g02129 825 Coils Coil 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02129 Vifa-Chr3 528807027 528815356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02129 668 797 C2H2 Transcription Factor Family AT2G23740 24.490 1.31e-08 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa3g02129 SET 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02129 - - gmx:100808730 1272.69