Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02127 ATGTCGAACTTCACGCTTTCCATCTCCTTAATCGGTGGATTGGGAATTTTTCAGTGCATTTTGCTGAAAACATTGCTTCTGTTGTTAATATTATGCAGGACAGTGTTAGTAGTTGACTGTGATTTTCCAGTTACACAAATTCCTTCTGTTATGGCTCACCCCCCATTGTCCTCTTATCTTTCCAATTACTGTAAAAAAGACATGGTATTGAAACGAGGTAGTGAGGGCTTTCGTTGCGTTTATCCTTTAAAGTTAGACCTTCTTCTTTTGAATGTCTCGCAAAACCCTGAATGGAATCCTTTTCTTGATCAATTGGCTGAACAATTGGGGATGCGGGCTACCCAAATTGAACTGATAAACTTTTATGTACACAGCTTATCGACATTGAATATGTCGATGTATATTACTCCGGAAAAAGATATGAGTTTCTCTGCCTATGAAGCATCTAAAATGAAGTCTTCACTTATATTTCACAAGGTTAGACTAGACAGTAGATTTGTGGGTGACTACGAGGTTCTCAATTTGACTTGGTTTAAACCTCCACCTCCTTCAAAAGCTCCTGCTTTTGCTGCATCAACTGTGAAAACTCCTGGGAGACAAGAACTTACAGCTACATCATTGAGTCCTTCAGACAGGGGAAGGCATTCAAATTTGGTTGTTATCCTTGGAATTGTTACTGGGATACTCATCATTTCCATTATGTGTTTAGTTATACTTTGTTTATGCACGCTCAGGCCAAAGACAAAAACACCTCCTACAGAAACTGAAAAGCCAAGGGTAGAACATGCAATTTCATCTGTTGGGTCACTTCCTTACCCAACCAGTACACGTTTTATTTCTTATGAAGATCTTAGAGAAGCAACAAAAAATTTTGAATCAGCAAGCATACTTGGAGAAGGAGGTTTTGGTAGAGTTTTTAAAGGTGTTTTGAATGATGGAACTTCTGTTGCAATTAAGAGGCTTACTAATGGAGGGCAGCAGGGTGACAAAGAGGTTTTGGTTGAGGTTGAGATGCTTAGCCGGTTGCATCACCGTAACCTTGTAAAACTAGTTGGATACTATAGCAATCCTGACTCATCACAAAACCTACTTTGCTATGAACTTGTCCCAAATGGAAGTTTAGAGACCTGGCTTCATGGTCCCTTGGGAATAAACTGCCCTTTGGATTGGGACACCAGGATGAAGATTGCACTTGATGCGGCAAGAGGGCTTGCTTACTTGCATGAAGATTCACAGCCATGTGTCATACATAGAGATTTCAAGGCATCTAATATATTGCTTGAGAACAATTTTCATGCTAAAGTTGCTGATTTTGGTCTAGCTAAACTAGCACATGAAGGCGGAGTTAATTACCAGTCTACTCGAGTCATGGGCACATTTGGGTATGTAGCACCTGAGTATGCCATGACTGGACACCTACTCGTTAAAAGCGATGTTTATAGCTACGGGGTTGTCTTGCTCGAACTGTTGACCGGAAAGAAACCTGTGGAAATGTCACAGCCAACTGGGCAAGAGAATCTTGTAACTTGGGCAAGGCCAATTCTTAGAGATAAGGAGCGGTTAGAAGAACTTGCTGATCCAAGGCTTGGGGGAAGGTATCCGAAGGAAGATTTTGTCCGGGTTTGCACTATCGCTGCAGCCTGTGTTGCACCTGAAGCAAGCCAACGACCTACAATGGGTGAAGTGGTACAGTCACTTAAAATGGTGCAGCACATCATTGAAAATCACGATCATGCAGTACCGTCATCCAATACAAGGCTTAACCTGAGACAATCTTCTACCGCTTATGATTCCGATGGGACATCTTCATTGTTTTCTTCTGGTCCTCACTCTGGTCTAAGTGCCTTTGACTATGAAAGCATTTCTAGGACAGCTGTTTTCTCTGAAGATCTTCATGAAGGACGATGA 1908 0.4161 MSNFTLSISLIGGLGIFQCILLKTLLLLLILCRTVLVVDCDFPVTQIPSVMAHPPLSSYLSNYCKKDMVLKRGSEGFRCVYPLKLDLLLLNVSQNPEWNPFLDQLAEQLGMRATQIELINFYVHSLSTLNMSMYITPEKDMSFSAYEASKMKSSLIFHKVRLDSRFVGDYEVLNLTWFKPPPPSKAPAFAASTVKTPGRQELTATSLSPSDRGRHSNLVVILGIVTGILIISIMCLVILCLCTLRPKTKTPPTETEKPRVEHAISSVGSLPYPTSTRFISYEDLREATKNFESASILGEGGFGRVFKGVLNDGTSVAIKRLTNGGQQGDKEVLVEVEMLSRLHHRNLVKLVGYYSNPDSSQNLLCYELVPNGSLETWLHGPLGINCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKLAHEGGVNYQSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGKKPVEMSQPTGQENLVTWARPILRDKERLEELADPRLGGRYPKEDFVRVCTIAAACVAPEASQRPTMGEVVQSLKMVQHIIENHDHAVPSSNTRLNLRQSSTAYDSDGTSSLFSSGPHSGLSAFDYESISRTAVFSEDLHEGR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02127 635 ProSiteProfiles Protein kinase domain profile. 291 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02127 635 FunFam Receptor-like serine/threonine-protein kinase ALE2 271 368 - -
Vifa3g02127 635 MobiDBLite consensus disorder prediction 188 209 - -
Vifa3g02127 635 Gene3D Phosphorylase Kinase; domain 1 273 368 - -
Vifa3g02127 635 Gene3D Transferase(Phosphotransferase) domain 1 369 588 - -
Vifa3g02127 635 PANTHER OS01G0750732 PROTEIN 62 583 - -
Vifa3g02127 635 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Vifa3g02127 635 Pfam Protein kinase domain 292 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02127 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Vifa3g02127 635 FunFam Receptor-like serine/threonine-protein kinase ALE2 369 585 - -
Vifa3g02127 635 SUPERFAMILY Protein kinase-like (PK-like) 265 570 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02127 Vifa-Chr3 528210573 528214240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02127 47 635 Receptor kinase-like Gene Family AT4G02010 69.543 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vifa3g02127 Pkinase 2.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02127 - - gmx:100792818 935.25