Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02120 ATGGGTGTGATGAGTGTGAAGAGTGAAGAAGATGTTGGTGTTGGTGGTGGTTCTTCATCTTTGTTAAACGGTTTTCAGTTTTCAAGCGTGTTTGATTTCTATGAGGTTGAAAAAAGTTCTTCTTTAGGGTTTATGGAGTTACTTGGTGTGGAAAACTATAGTTCTTTGCTTGATGTACCACAACTATCATCAACCATGTCTTCGATGGCTCATCGCCAAACTACAATTATGTCTTCATCTGATACTAATGGAAAAGACTCTTCTGAGGTTTTGAATCAACTGCCTCAAACTCCTAACTCTTGCTCGATTTCATCGGCTTCTAGTGAAGCTGTTAATGATGAACAACACAATAGGACTCTTGTTGACCAAGTCCAAGAAGATGGTGAAGAAGAAAAACAAAAAACCAGCAAACAGTTGAAGACCAAGAAGACAAATCAAAAGAGACAGAGAGAACCAAGATTCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTCAAAAACAGCCCTTTTCCAAGGAGCTATTACCGCTGCACCACTGTTTCATGTAATGTGAAGAAACGTGTGGAGCGTTCTTATACTGATCCAACCATTGTAGTCACAACTTATGAAGGCCAACACATTCATCCAAGTCCAGCTATGTCCCGTTCCGCCTTCGCCGGAGTTCAGATACCACCACCTACTGGTGCACTCTCCGGTGGATTTCCGGCCACTAACTTCGGTTCAGTTCTGCAAGAGAACAACTACTTTTTACAGTATCAGCAGCAACAACATCATCCTCATCAACAACTACTGGTTAATACATTGTCCTCTTTGAGTAACCCTTATAATTACAATCCTTTTACTCAAGAGAAAAAGCTTTGTAATCCAGGGACAACTACTTCCTTTCTTAGGGACCATGGTCTTCTTCAAGATGTTGTTCCTTCACATATGTTGAAAGAAGAGTAA 987 0.4113 MGVMSVKSEEDVGVGGGSSSLLNGFQFSSVFDFYEVEKSSSLGFMELLGVENYSSLLDVPQLSSTMSSMAHRQTTIMSSSDTNGKDSSEVLNQLPQTPNSCSISSASSEAVNDEQHNRTLVDQVQEDGEEEKQKTSKQLKTKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTVSCNVKKRVERSYTDPTIVVTTYEGQHIHPSPAMSRSAFAGVQIPPPTGALSGGFPATNFGSVLQENNYFLQYQQQQHHPHQQLLVNTLSSLSNPYNYNPFTQEKKLCNPGTTTSFLRDHGLLQDVVPSHMLKEE 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02120 328 SMART WRKY_cls 165 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g02120 328 MobiDBLite consensus disorder prediction 68 150 - -
Vifa3g02120 328 FunFam WRKY transcription factor 57 151 225 - -
Vifa3g02120 328 MobiDBLite consensus disorder prediction 115 138 - -
Vifa3g02120 328 SUPERFAMILY WRKY DNA-binding domain 157 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa3g02120 328 ProSiteProfiles WRKY domain profile. 160 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g02120 328 PIRSF WRKY_txn_fact_IIc 4 328 IPR017396 GO:0003700
Vifa3g02120 328 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 92 266 IPR044810 GO:0003700
Vifa3g02120 328 Pfam WRKY DNA -binding domain 166 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g02120 328 Gene3D WRKY domain 150 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa3g02120 328 MobiDBLite consensus disorder prediction 68 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02120 Vifa-Chr3 526281254 526282533 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02120 29 328 WRKY Transcription Factor Family AT2G47260 46.154 1.13e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa3g02120 WRKY 3.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02120 - - aprc:113872234 348.206