Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02119 ATGGAGAAGAAAGAGATGGGTGTGATGAGTGTGAAGAGTGAAGAAGATGTTGGTGTTGGTGGTGGTTCTTCATCTTTGTTAAACGGTTTTCAGTTTTCAAGCGTGTTTGATTTCTATGAGGTTGAAAAAAGTTCTTCTTTAGGGTTTATGGAGTTACTTGGTGTGGAAAACTATAGTTCTTTGCTTGATGTACCACAACTATCATCAACCATGTCTTCGATGGCTCATCGCCAAACTACAATTATGTCTTCATCTGATACTAATGGAAAAGACTCTTCTGAGGTTTTGAATCAACTGCCTCAAACTCCTAACTCTTGCTCGATTTCATCGGCTTCTAGTGAAGCTGTTAATGATGAACAACACAATAGGACTCTTGTTGACCAAGTCCAAGAAGATGGTGAAGAAGAAAAACAAAAAACCAGCAAACAGCTGAAGACCAAGAAGACAAATCAAAAGAGACAGAGAGAACCAAGATTCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTCAAAAACAGCCCTTTTCCAAGGAGCTATTACCGCTGCACCACTGTTTCATGTAATGTGAAGAAACGTGTGGAGCGTTCTTATACTGATCCAACCATTGTAGTCACAACTTATGAAGGCCAACACATTCATCCAAGTCCAGCTATGTCCCGTTCCGCCTTCGCCGGAGTTCAGATACCACCACCTACTGGTGCACTCTCCGGTGGGTTTCCGGCCACTAACTTCGGTTCAGTTCTGCAAGAGAACAACTACTTATTACAGTATCAGCAGCAACAACATCATCCTCATCAACAACTACTGGTTAATACATTGTCCTCTTTGAGTAACCCTTATAATTACAATCCTTTTACTCAAGAGAAAAAGCTTTGTAATCCAGGGACAACTACTTCCTTTCTTAGGGACCATGGTCTTCTTCAAGATGTTGTTCCTTCACATATGTTGAAAGAAGATGAAAATTTTATATACCAATATGGAAGCAAGGTTATAAATAAGGAGAATAATTCAACCACTCTAATCCATTTAGAGGTAGATGAATAA 1086 0.4024 MEKKEMGVMSVKSEEDVGVGGGSSSLLNGFQFSSVFDFYEVEKSSSLGFMELLGVENYSSLLDVPQLSSTMSSMAHRQTTIMSSSDTNGKDSSEVLNQLPQTPNSCSISSASSEAVNDEQHNRTLVDQVQEDGEEEKQKTSKQLKTKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTVSCNVKKRVERSYTDPTIVVTTYEGQHIHPSPAMSRSAFAGVQIPPPTGALSGGFPATNFGSVLQENNYLLQYQQQQHHPHQQLLVNTLSSLSNPYNYNPFTQEKKLCNPGTTTSFLRDHGLLQDVVPSHMLKEDENFIYQYGSKVINKENNSTTLIHLEVDE 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02119 361 ProSiteProfiles WRKY domain profile. 165 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g02119 361 PIRSF WRKY_txn_fact_IIc 1 334 IPR017396 GO:0003700
Vifa3g02119 361 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 97 272 IPR044810 GO:0003700
Vifa3g02119 361 SUPERFAMILY WRKY DNA-binding domain 162 230 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa3g02119 361 Gene3D WRKY domain 155 231 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa3g02119 361 MobiDBLite consensus disorder prediction 73 119 - -
Vifa3g02119 361 FunFam WRKY transcription factor 57 156 230 - -
Vifa3g02119 361 MobiDBLite consensus disorder prediction 73 155 - -
Vifa3g02119 361 MobiDBLite consensus disorder prediction 120 143 - -
Vifa3g02119 361 Pfam WRKY DNA -binding domain 171 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g02119 361 SMART WRKY_cls 170 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02119 Vifa-Chr3 526212462 526214669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02119 34 333 WRKY Transcription Factor Family AT2G47260 45.858 7.19e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa3g02119 WRKY 4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02119 - - aprc:113872234 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02119 3 526212462 526214669 Vifa3g02119 3 526212462 526214669 ECH
Vifa5g03559 5 1160031870 1160033062 Vifa3g02119 3 526212462 526214669 PCT