Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02112 ATGGATATTAAGGTTAAGAAAAATGAGTCTACAAACCTCAATGAATTAAGAAAGGGTCCATGGACGTTAGAAGAGGACACCATTCTTGTTAGTTACATTACATCCCACGGTGAAGGTCTCTGGAACACTGTTGCATCTTCTGCAGGTCTGAAGAGAAGTGGAAAAAGTTGCAGATTAAGGTGGCTAAATTATTTGCGTCCCGATGTTCGCCGTGGAAATATCACACTCCAAGAACAGATTCTTATTCTTGAACTCCACTCTCGCTGGGGCAATAGGTGGTCGAAAATTGCACAGCATCTTCCGGGAAGAACAGACAATGAAATAAAGAACTATTGGAGAACGAGAGTGATCAAGCAAGCGAAGCAGCTCAAGTGCGATGTCAATAGTAAACAGTTCAGAGATGTCTTGCGTTGCGTGTGGATGCCACGTTTGCTTGAACAGGTTCAAACCTCATCCGGATTTCACGACCCGAATAGACCCGAGTCCGTTCTTCATCAAAACACATCGCACAGTTCAGTTTCAGGAACAGAATGGCCAAACACAAACAACTCCTCGGAATCTTCATCACTGGAATTCCAAGCTCCTTCGATTTCAGACCATGAAGTGTTGCCATGTTTCAATAACCAGGTTCCAGAACAAGGGAATAGTAGTAGTGGTGGTGACGACTCGTTGGAGACTTTTTTGAACGATGAGAGCATGTGGTTTATGCAACAACTTTCTGAAGATTTTGAAATAAAATACAATTTACTTGCGTGA 756 0.4272 MDIKVKKNESTNLNELRKGPWTLEEDTILVSYITSHGEGLWNTVASSAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQILILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDVLRCVWMPRLLEQVQTSSGFHDPNRPESVLHQNTSHSSVSGTEWPNTNNSSESSSLEFQAPSISDHEVLPCFNNQVPEQGNSSSGGDDSLETFLNDESMWFMQQLSEDFEIKYNLLA 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02112 251 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Vifa3g02112 251 FunFam MYB transcription factor 75 138 - -
Vifa3g02112 251 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Vifa3g02112 251 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Vifa3g02112 251 CDD SANT 20 65 IPR001005 -
Vifa3g02112 251 FunFam Myb transcription factor 18 70 - -
Vifa3g02112 251 SMART sant 70 118 IPR001005 -
Vifa3g02112 251 SMART sant 17 67 IPR001005 -
Vifa3g02112 251 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Vifa3g02112 251 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Vifa3g02112 251 Gene3D - 75 116 - -
Vifa3g02112 251 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 188 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vifa3g02112 251 MobiDBLite consensus disorder prediction 151 191 - -
Vifa3g02112 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Vifa3g02112 251 Gene3D - 18 70 - -
Vifa3g02112 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Vifa3g02112 251 CDD SANT 75 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02112 Vifa-Chr3 523484467 523485429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02112 15 151 MYB Transcription Factor Family AT1G48000 75.182 3.04e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa3g02112 Myb_DNA-binding 8.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02112 K09422 - gmx:100797220 281.952