Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02107 ATGGTGGCGGAAGCAGAGGTTGTGTGTCAGCAAAGCGTGGGTGTGTTGGAGGTGAAGTATTTTCCGAATAAAGGAAGCAATATTCATGAGATCGGTGATGCAGATGCTGTAACGTCTTCGAATTTTGATCGAGTTCGTGCTTCTGAATTGGATTCTGCTGAGTTACTTACTATAAAAGAAGATGTTAAGACTGCAGACATAATCTCAGAAGCTGCAGTTTTGCAATTTGTCCCTTGCATTCGTTCTGGTAGTTTTTCCGACATTGGGCCACGTAGATACATGGAAGATGAACATATAAGGATAGATGAATTGACTTCTCATCTAGGATCACTATATAAATTTCCTAAACCAAGTGCCTTTTACGGGGTGTTTGATGGTCATGGAGGACCTGAAGCAGCAGCTTATATGAGAAAAAATGTTATAAAATTCTTCTTTGAGGATGTCAATTTCCCTCAGACATCTGAAGTTGATAACATATTTTTACAGGAGGTAGAGAATTCCCTCAGAAAGGCTTTTCTTTTGGCGGACTCGGCTATGGCTGATGATTGCAGTGTGAACACTTCTTCAGGGACCACAGCTCTTACTGCTATGATATTTGGAAGACTTCTAATGGTGGCCAACGCTGGTGACTGTCGAGCAGTTCTCAGTCGTAAAGGAGAGGCCATTGATATGTCTCAAGATCACCGGCCTATTTATCCACTAGAGCGGAAACGAGTTGAAGAATTGGGTGGATATGTAGAAGATGGTTACCTAAATGGCGTTTTATCAGTTACCAGAGCATTAGGGGACTGGGACATGAAATTACCTAGGGGTGCTCCCTCACCTTTGATTGCAGAGCCCGAGTTTCGTCAAATGGTTCTAACAGATGACGACGAATTCCTCATCATAGGATGCGATGGCATCTGGGATGTGATGTCAAGCCAGCATGCCGTTAGCCTTGTACGTAAAGGGTTGAGGAGGCACGATGACCCAGATAAGTGTGCCAGAGATCTAGTAATGGAGGCATTACGCCTCAATACATTCGACAATCTCACAGTGATCATTATATGTCTCTCTTCCATTGACCACGGGGAGTCAGAGCCATCCCCTCCTCCCCAAAGGAAATTGAGATGCTGCAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGAAATTTGTTGGAAGGAAGTGCTAGCAACTGA 1179 0.4419 MVAEAEVVCQQSVGVLEVKYFPNKGSNIHEIGDADAVTSSNFDRVRASELDSAELLTIKEDVKTADIISEAAVLQFVPCIRSGSFSDIGPRRYMEDEHIRIDELTSHLGSLYKFPKPSAFYGVFDGHGGPEAAAYMRKNVIKFFFEDVNFPQTSEVDNIFLQEVENSLRKAFLLADSAMADDCSVNTSSGTTALTAMIFGRLLMVANAGDCRAVLSRKGEAIDMSQDHRPIYPLERKRVEELGGYVEDGYLNGVLSVTRALGDWDMKLPRGAPSPLIAEPEFRQMVLTDDDEFLIIGCDGIWDVMSSQHAVSLVRKGLRRHDDPDKCARDLVMEALRLNTFDNLTVIIICLSSIDHGESEPSPPPQRKLRCCSLSAEALCSLRNLLEGSASN 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02107 392 SUPERFAMILY PP2C-like 74 352 IPR036457 -
Vifa3g02107 392 CDD PP2Cc 80 351 IPR001932 -
Vifa3g02107 392 Gene3D - 69 357 IPR036457 -
Vifa3g02107 392 FunFam Probable protein phosphatase 2C 22 65 354 - -
Vifa3g02107 392 PANTHER PROTEIN PHOSPHATASE 2C 75 349 IPR015655 GO:0004722|GO:0006470
Vifa3g02107 392 ProSitePatterns PPM-type phosphatase domain signature. 120 128 IPR000222 GO:0043169
Vifa3g02107 392 ProSiteProfiles PPM-type phosphatase domain profile. 81 351 IPR001932 -
Vifa3g02107 392 SMART PP2C_4 71 349 IPR001932 -
Vifa3g02107 392 Pfam Protein phosphatase 2C 91 343 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02107 Vifa-Chr3 522633529 522636112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02107 94 388 PP2C-type Phosphatase Gene Family AT3G62260 68.581 1.59e-153 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Vifa3g02107 PP2C 8.2e-64 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02107 K14803 - gmx:100819791 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02107 3 522633529 522636112 Vifa3g02107 3 522633529 522636112 ECH