Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02106 ATGGCAACAGCGGGTGCAGCACCTGCTTCTGGATTAAGAGATGTAAATGCAAGTTCAGTAATTGCTGCTGAAAGGTTACCTGATGAGATTCTTGGCATGAGAATTAAGGATGATAAGGAAATGGAAGCAAGTGTGGTTGATGGAAGTAGTACTGAAGCAGGACATGTGATTGTCACTACTATTGGTGGTAAAAATGGCCAGCCAAAGCAGACAATAAGTTACATGGCTGAGCGTGCGGTTGGACAAGGATCATTTGGTATAGTTTTCCAGGCAAAATGCTTGGAGACAGGTGAAACCGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGACACTACAGCAAAATGAATCAAAGGATGCCGTTGATATATGTAAAACTTTATTCTTACCAGATATGTAGAGCACTAGCTTATATACATAACTGTGTTGGAGTGTCTCATAGGGACATAAAACCTCAAAATCTACTGGTCAATCCTCACACGCACCAGCTGAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTCAAAGGTGAGCCAAACATATCTTACATCTGTTCAAGATATTACAGAGCTCCCGAGCTTATATTTGGCGCAACTGAGTACACCGCAGCCATTGACATTTGGTCAGCTGGATGTGTACTTGGGGAACTATTGCTTGGCCAGCCTCTCTTTCCTGGTGCAAGTGGAGTTGATCAGCTCGTTGAGATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATAAAGTGTATGAATCCTAATTACACAGAGTTCAAATTCCCACAAATCAAAGCTCATCCGTGGCACAAGATCTTTCGCAAGCGTATGCCACCTGAGGCCGTGGATCTCGTCTCAAGACTACTGCAATACTCTCCTAATCTTCGAAGCACAGCTTTGGAGGCCCTGGTTCATCCATTCTTCGATGAATTGCGTGATCCAAATACCCGCTTACCAAATGGGCGCCATCTTCCTCCTTTATTTAACTTCAAAGCGAATGAGCTTAAGGGAGTGCCTGCCGAAATGCTGGTGAAGCTGATTCCGTCTCACGCAAGAAAGCAATCTGCCTTGTTTGTGTCATAG 1080 0.4398 MATAGAAPASGLRDVNASSVIAAERLPDEILGMRIKDDKEMEASVVDGSSTEAGHVIVTTIGGKNGQPKQTISYMAERAVGQGSFGIVFQAKCLETGETVAIKKVLQDKRHYSKMNQRMPLIYVKLYSYQICRALAYIHNCVGVSHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTAAIDIWSAGCVLGELLLGQPLFPGASGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFRKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRHLPPLFNFKANELKGVPAEMLVKLIPSHARKQSALFVS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02106 359 SUPERFAMILY Protein kinase-like (PK-like) 74 313 IPR011009 -
Vifa3g02106 359 Pfam Protein kinase domain 119 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02106 359 FunFam Shaggy-related protein kinase kappa 103 351 - -
Vifa3g02106 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Vifa3g02106 359 ProSitePatterns Protein kinases ATP-binding region signature. 80 104 IPR017441 GO:0005524
Vifa3g02106 359 CDD STKc_GSK3 69 310 IPR039192 -
Vifa3g02106 359 Gene3D Transferase(Phosphotransferase) domain 1 104 351 - -
Vifa3g02106 359 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 38 110 - -
Vifa3g02106 359 SMART serkin_6 74 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02106 359 ProSiteProfiles Protein kinase domain profile. 1 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02106 Vifa-Chr3 522467094 522469672 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02106 78 312 MAP Kinase Gene Family AT3G59790 33.448 1.25e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vifa3g02106 Pkinase 2.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02106 K00924 - gmx:100788046 645.966