Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02105 ATGGCAACAGCGGGTGCAGCACCTGCTTCTGGATTAAGAGATGTAAATGCAAGTTCAGTAATTGCTGCTGAAAGGTTACCTGATGAGATTCTTGGCATGAGAATTAAGGATGATAAGGAAATGGAAGCAAGTGTGGTTGATGGAAGTAGTACTGAAGCAGGACATGTGATTGTCACTACTATTGGTGGTAAAAATGGCCAGCCAAAGCAGACAATAAGTTACATGGCTGAGCGTGCGGTTGGACAAGGATCATTTGGTATAGTTTTCCAGGCAAAATGCTTGGAGACAGGTGAAACCGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTACAAACAATGCGCCTTTTAGACCACCCCAATGTTGTAACTTTGAAGCATTGTTTCTTTTCAACAACTGAAAAAGACGAGCTCTATCTTAACTTGGTACTTGAGTATGTTCCTGAGACTGTCCATCGTGTGATCAGACACTACAGCAAAATGAATCAAAGGATGCCGTTGATATATGTAAAACTTTATTCTTACCAGATATGTAGAGCACTAGCTTATATACATAACTGTGTTGGAGTGTCTCATAGGGACATAAAACCTCAAAATCTACTGGTCAATCCTCACACGCACCAGCTGAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTCAAAGGTGAGCCAAACATATCTTACATCTGTTCAAGATATTACAGAGCTCCCGAGCTTATATTTGGCGCAACTGAGTACACCGCAGCCATTGACATTTGGTCAGCTGGATGTGTACTTGGGGAACTATTGCTTGGCCAGCCTCTCTTTCCTGGTGCAAGTGGAGTTGATCAGCTCGTTGAGATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATAAAGTGTATGAATCCTAATTACACAGAGTTCAAATTCCCACAAATCAAAGCTCATCCGTGGCACAAGATCTTTCGCAAGCGTATGCCACCTGAGGCCGTGGATCTCGTCTCAAGACTACTGCAATACTCTCCTAATCTTCGAAGCACAGCTTTGGAGGCCCTGGTTCATCCATTCTTCGATGAATTGCGTGATCCAAATACCCGCTTACCAAATGGGCGCCATCTTCCTCCTTTATTTAACTTCAAAGCGAATGAGCTTAAGGGAGTGCCTGCCGAAATGCTGGTGAAGCTGATTCCGTCTCACGCAAGAAAGCAATCTGCCTTGTTTGTGTCATAG 1233 0.4355 MATAGAAPASGLRDVNASSVIAAERLPDEILGMRIKDDKEMEASVVDGSSTEAGHVIVTTIGGKNGQPKQTISYMAERAVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVTLKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYSKMNQRMPLIYVKLYSYQICRALAYIHNCVGVSHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTAAIDIWSAGCVLGELLLGQPLFPGASGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFRKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRHLPPLFNFKANELKGVPAEMLVKLIPSHARKQSALFVS 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02105 410 SMART serkin_6 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02105 410 ProSitePatterns Protein kinases ATP-binding region signature. 80 104 IPR017441 GO:0005524
Vifa3g02105 410 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 38 404 - -
Vifa3g02105 410 Gene3D Phosphorylase Kinase; domain 1 58 153 - -
Vifa3g02105 410 FunFam Shaggy-related protein kinase kappa 154 402 - -
Vifa3g02105 410 Gene3D Transferase(Phosphotransferase) domain 1 154 402 - -
Vifa3g02105 410 ProSiteProfiles Protein kinase domain profile. 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02105 410 CDD STKc_GSK3 69 361 IPR039192 -
Vifa3g02105 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Vifa3g02105 410 Pfam Protein kinase domain 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02105 410 SUPERFAMILY Protein kinase-like (PK-like) 73 382 IPR011009 -
Vifa3g02105 410 FunFam Glycogen synthase kinase-3 beta 58 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02105 Vifa-Chr3 522467094 522469672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02105 78 365 MAP Kinase Gene Family AT4G01370 36.700 8.10e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vifa3g02105 Pkinase 2.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02105 K00924 - gmx:100788046 773.467