Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02098 ATGGAGGCTAGATTGGGTGCTGAGGGTTATAATTTTTATGGTGTTGGTGGTGGTTCGTCTGATTTGAGTAGTATGGGGAAGAGGACTAGAGAATGGAATTTGAATGATTGGAGATGGGATGGTGATTTGTTCATAGCTAGCCGTGTGAATCCGGTGCCAGCGGATAGTCTGAGAGTGGGACATGGACAACAGTTTTTCCCGCTTGGGTTTGGGATCTCGGTGGTCGGGGGTTCCTCTAACACCTCTTCTTCATGCTCTGAGGAAGGAGATCTTGAGAATCCTAAAAGGAACAAGGAAGGGGAGAGGAAAAGGAGAGTTACTGTTCTGGAAGATGATGGTTTGAACGAGGAAGCTGGTGCCCTTAGTTTACAGCTTGCTGGACATGCTTCACCGGTGGTGGAAAGGGAGATTGCGAGCTGGGATGGTGTGAATGGAAAGAAAAGCAAAGTAGCTGGAGGTGCTTCGAATCGAGCTGTTTGTCAGGTTAAAGACTGTGGTGCAGATCTGAGCAGAGGTAAGGATTATCACAGACGTCATAAAGTTTGTGAGATGCATTCTAAGGCTACTAGGGCACTTGTGGGGAATGCAATGCAGAGGTTTTGTCAACAGTGTAGTAGGTTTCACTTACTTCAAGAGTTTGATGAAGGAAAGCGAAGCTGTCGGAGACGCTTGGCTGGCCATAATAAACGGAGAAGGAAAACAAATAATGAAGTTATTCTTAATGGAAGTCCGACAAATGATGATCAGACCAGTAATTATCTCTTGATAAGTTTATTGAAGATACTTTCAAATATGCATTCTGACAGGTCAGATCAGCCTACAGATCAGGATCTTCTAACTCATCTTCTAAGGAGTCTTGCTAGTCAGAATGATGAGCAGGGGTGCAAGAACTTGTCAAACCTTTTGCAGGAACAAGAGATTGTGTTGAGAGAAGGAGATTCTTCTAGGAAGTCAGAGATGGTGTCAGCTTTATTCTCCAATGGTTCTCAAGGCTCTCCAACTGTTATAGCACAAAACCAAACTGTATCTATGAATAAAATGCAACAAGAAATGATGCATACTCATGATGTTAGGACCGTTGATCATCAACTCGTATCTTCAATAAAGCCCAGCATTTCAAACAGTCCTCCGATTTACTCAGAAGTTAGAGATAGTAGTGCACAAATAAAGATGAATAATTTTGATTTGAATGACATATACATTGACTCAGATGATGGCATGGAAGATCTACAAATATTGCCAGTCTCTACAAATATTGGCACTAGCTCTGTTGATTACCCATGGACACAACTAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAACTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCTAGTGGAGAAGCTCATAGTCGGACAGATCGGATTGTTTTTAAACTCTTTGGTAAAGAGCCAAATGAGTTTCCTCTTGTACTTAGAGCACAGATTCTTGATTGGTTATCCCACAGTCCTACCGATATTGAGAGCTACATACGGCCTGGGTGTATTGTTTTGACTATTTATCTACGTCAGGCTGAGGCTGTGTGGGACGATCTGTGCTGTGATCTGACTTCCAGTTTGAGTAAGCTGCTGGATGTCTCAGATGATACATTTTGGAGAACTGGATGGGTTCATTTCAGGGTGCAGCATCAAATGGCATTCATTTCCAATGGTCAAGTTGTAATAGATACATCACTACCTTTTAGAAGCAACAATTATAGTAAGATTTGTACTGTTAGTCCGATTGCTGTACCAGCATCAAAGAGAACTCAATTTTCTGTTAAAGGTGTCAACCTAATGCGCCCTGCCACAAGGTTGATGTGTGCTTTAGAAGGAAACTATCTGGTGTGTGAAGATGCTCATGAGTCAATAGATCAATACTCCAAGGAGCTTGATGAACTTCAGTGTATTCAATTTTCATGTTCGGTCCCTGTTACGAATGGGAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTCTTTCCTTTCATAGTGGCAGAGGAGGATGTTTGCTCAGAGATTTGTGTGCTTGAGCCTTTACTAGAACTAAGTGAAACTGATCCAGATATTGAAGGGACTGAAAAAATTAAAGCCAAAAGTCAAGCTATGGATTTCATTCATGAAATGGGCTGGCTTCTTCACAGAAGTCAATTGAAATATAGGATGGTTCACTTGAACTCTGATGTGGATCTCTTTCCATTAGAACGGTTCACGTGGCTTATGGAGTTTTCCATGGACCGTGATTGGTGTGCAGTGGTAAAAAAAACTGTTGAATATACTGCTTGA 2307 0.4209 MEARLGAEGYNFYGVGGGSSDLSSMGKRTREWNLNDWRWDGDLFIASRVNPVPADSLRVGHGQQFFPLGFGISVVGGSSNTSSSCSEEGDLENPKRNKEGERKRRVTVLEDDGLNEEAGALSLQLAGHASPVVEREIASWDGVNGKKSKVAGGASNRAVCQVKDCGADLSRGKDYHRRHKVCEMHSKATRALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNNEVILNGSPTNDDQTSNYLLISLLKILSNMHSDRSDQPTDQDLLTHLLRSLASQNDEQGCKNLSNLLQEQEIVLREGDSSRKSEMVSALFSNGSQGSPTVIAQNQTVSMNKMQQEMMHTHDVRTVDHQLVSSIKPSISNSPPIYSEVRDSSAQIKMNNFDLNDIYIDSDDGMEDLQILPVSTNIGTSSVDYPWTQLDSHQSSPPQTSGNSDSASAQSPSSSSGEAHSRTDRIVFKLFGKEPNEFPLVLRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQAEAVWDDLCCDLTSSLSKLLDVSDDTFWRTGWVHFRVQHQMAFISNGQVVIDTSLPFRSNNYSKICTVSPIAVPASKRTQFSVKGVNLMRPATRLMCALEGNYLVCEDAHESIDQYSKELDELQCIQFSCSVPVTNGRGFIEIEDQGLSSSFFPFIVAEEDVCSEICVLEPLLELSETDPDIEGTEKIKAKSQAMDFIHEMGWLLHRSQLKYRMVHLNSDVDLFPLERFTWLMEFSMDRDWCAVVKKTVEYTA 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02098 768 Gene3D - 151 221 IPR036893 GO:0003677|GO:0005634
Vifa3g02098 768 FunFam Squamosa promoter-binding-like protein 14 151 221 - -
Vifa3g02098 768 MobiDBLite consensus disorder prediction 89 103 - -
Vifa3g02098 768 Coils Coil 621 641 - -
Vifa3g02098 768 ProSiteProfiles Zinc finger SBP-type profile. 157 234 IPR004333 GO:0003677
Vifa3g02098 768 SUPERFAMILY SBT domain 158 239 IPR036893 GO:0003677|GO:0005634
Vifa3g02098 768 Pfam SBP domain 160 233 IPR004333 GO:0003677
Vifa3g02098 768 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 82 761 IPR044817 GO:0003677
Vifa3g02098 768 MobiDBLite consensus disorder prediction 426 461 - -
Vifa3g02098 768 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02098 Vifa-Chr3 521605068 521610273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02098 1 764 SBP-box Gene Family AT3G60030 52.571 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa3g02098 SBP 1.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02098 - - gmx:100814273 1204.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02098 3 521605068 521610273 Vifa3g02098 3 521605068 521610273 ECH