Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02097 ATGTTCGATGGATGGGACAGTCCTCATTATCCATCCAATATCCTGAACTATATTCGATTGAGACTAACAAAAAGAGTAGCGTTGCAGATCAAGGGAGCTGAAATGCTGGAAGATATCACAATAATAATCAAAGTTCTTATTCCAACTCAAAGCGAGTCAAAAGCTTTGCTGTACCTCGCCCTCACCTTTATTCTACGCACCCTCCCTGCTTATCCTGCGCTCCTTCACCGTTTCATCGACTCAAATACTCAACAATACGCATCTTCTCCTTCCGCTTCAACACTCCCATCTCAACAATTTCACTCTTCTGTTTCGTTTCAGGAAAGAATCATGAGTTGTTTCAGCTGTTGCCAAGAGGATGAGTTCCACAAGGTTGCTGAGAGTGGCGGACCATATATTGTAAAAAATCCAGCAGGGAATGATGGAAATTACCATGCTTCTGAGTCTACAAAACCAGGAGCTCAGACTGTTAAAGTGCAGCCCATTGAAGTTCCAGAGATACAGGCCGATGAACTAAAAGAAGTTACTGATAACTTTGGACAAGATTCTCTGATTGGAGAGGGATCGTATGGAAGAGTTTACTATGGAGTTCTTAAGAATGGCCAGGCTGCAGCAATCAAGAAGTTAGATGCCAGTAAACAGCCTGATGAGGAATTCTTGGCCCAGGTTTCTATGGTATCAAGGCTGAAACACGATAATTTTGTCCAGTTGCTTGGATACTGTGTTGATGGAAACTCCCGTATTCTTGCTTATGAGTTTGCATCTAATGGTTCTCTTCATGACATTCTACATGGCAGAAAAGGGGTTAAAGGAGCACAACCTGGTCCAGTTTTGACATGGGCACAAAGAGTAAAAATTGCTGTAGGGGCTGCAAGAGGGCTTGAATACTTGCATGAGAAGGCTGATCCCCATATTATTCATAGGGACATCAAGTCAAGCAATGTGCTAATCTTTGAAGATGATGTTGCAAAAATTGCAGATTTTGATTTGTCAAATCAGGCTCCAGACATGGCTGCACGTCTTCATTCCACTCGTGTCCTTGGAACCTTTGGTTATCATGCACCTGAATATGCAATGACTGGACAATTGAATGCTAAGAGTGATGTATACAGTTTTGGTGTTGTCCTTCTGGAACTTTTGACCGGAAGGAAACCTGTTGATCATACACAACCACGTGGACAGCAGAGTCTGGTTACCTGGGCTACACCAAAACTCAGCGAGGATAAAGTCAGGCAGTGTGTTGATACAAGACTAGGAGGAGAGTACCCACCAAAAGCAGTTGCTAAGATGGCTGCTGTTGCTGCATTGTGTGTGCAATATGAAGCTGATTTCAGACCTAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTGTTGACTGCCCGAGCTGGACCTGCTGGTGAAACAGCAAATTAA 1416 0.4329 MFDGWDSPHYPSNILNYIRLRLTKRVALQIKGAEMLEDITIIIKVLIPTQSESKALLYLALTFILRTLPAYPALLHRFIDSNTQQYASSPSASTLPSQQFHSSVSFQERIMSCFSCCQEDEFHKVAESGGPYIVKNPAGNDGNYHASESTKPGAQTVKVQPIEVPEIQADELKEVTDNFGQDSLIGEGSYGRVYYGVLKNGQAAAIKKLDASKQPDEEFLAQVSMVSRLKHDNFVQLLGYCVDGNSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFEDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTQPRGQQSLVTWATPKLSEDKVRQCVDTRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLTARAGPAGETAN 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02097 471 ProSiteProfiles Protein kinase domain profile. 179 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02097 471 CDD STKc_IRAK 185 458 - -
Vifa3g02097 471 FunFam PTI1-like tyrosine-protein kinase 3 143 253 - -
Vifa3g02097 471 Gene3D Transferase(Phosphotransferase) domain 1 254 464 - -
Vifa3g02097 471 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 114 462 - -
Vifa3g02097 471 SUPERFAMILY Protein kinase-like (PK-like) 156 455 IPR011009 -
Vifa3g02097 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Vifa3g02097 471 FunFam pto-interacting protein 1 255 466 - -
Vifa3g02097 471 ProSitePatterns Protein kinases ATP-binding region signature. 185 208 IPR017441 GO:0005524
Vifa3g02097 471 SMART serkin_6 179 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02097 471 Gene3D Phosphorylase Kinase; domain 1 141 253 - -
Vifa3g02097 471 Pfam Protein tyrosine and serine/threonine kinase 183 455 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02097 Vifa-Chr3 520369140 520374049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02097 170 456 Receptor kinase-like Gene Family AT4G02010 51.890 5.12e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vifa3g02097 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02097 K13436 - gmx:100808383 666.381