Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02096 ATGAACGGAAAAGTACTAGTCTCTGGTGTATCCATCATTCTTGTGGTGGGTGTTGCCATCGGTGTCGTTGTCGTGGTTAACAAACAGGGTAGTGATCCTCAATTAGCAGCACATGAGAAAAATGTGCAATCCATGTGTCAAGCAACTGAAGATCAAAAACTTTGTCATGACACTCTTATCAGCGCGAAACCGGCCAATTCCTCTGATCCAACAGCTTATTTAGCAGTTGTAGTTCAAGCGAGTGCGCAAAAAGTTATCGCTGCGTTGAATATGACTGATAGGCTATCGATTGAACATGGTGACAAAGATCCCAGTATCAAAATGGCACTCGATGATTGCAAAGACTTGATGCAATTCGCTCTCGACAGTCTTGAAGCTTCGGGTAATTTGGTTCGCGATAACAACATTCAGGCGATTCATGATCAGACGCCTGATTTTAGAAACTGGTTGAGCGCTGTTATATCGTACCAACAGTCGTGTATGGACGGGTTTAATAATGAGACGAACGGCGAGGATAAGATCAAACAACAGTTGCAGACAGATAGTTTGGACCAAATGGAGAAACTAACTGGCATCACACTTGACATTGTAGCTAGTATGGGTAACATTCTTCAGGCTTTCGACTTGAAGCTGGAATTGAATCCAGCTTCTCGCCGTCTTCTGGACGCTAATGAGATTGACAATGAAGGACTGCCCACATGGTTCTCCGCTACAGATCGTAAGCTACTGGCTAACCACCCAGGTGGAGGACCTGCACCTAATGCAGTGGTTGCTAAAGACGGTAGCGGTAAATTTAAGTCAGTTAAAGAGGCTATTGATTCCTACCCTAAGGATTTCAAAGGGAGATACATTATCTATGTTAAGGCCGGAGTCTACGACGAGTACATCACCATTCCGAAAAAGTCGATTAATATTCTTATGTATGGTGATGGCCCGACAAAGACCATTATCACTGGTCACAAAAACTTCGCCGATGGTACGAAGACAATGCAGACAGCCACATTCGCGAATACTGCACCTGGATTCATTGCAAAATCAATTGCGTTCGAGAACACAGCTGGTGCAGCAAAACATCAAGCAGTGGCATTTAGGAACCAAGGAGACATGTCAGCTTTCTTCGACTGCGCCATGCATGGTTTCCAAGACACGTTATACGTCCAAACTAACCGTCAATTCTACCGCAACTGTGAAATCTCTGGCACAGTAGACTTCATATTTGGCTCATCTCCAACCTTAATTCAAAACTCAAGAATCATCGTCCGAAAACCAGGACCTGGTCAGTTCAACACAGTAACCGCGGACGGAACAAAACAGCGTAACATGGCATCAGGGATTGTGATCCAGAATTGCGAAATCGTTCCTGAGAAAGATTTGTTCCCGGTCAGAATGCAGTTCAAGTCATACTTAGGCAGGCCATGGAAAGATTACTCTAGGACAGTTGTTATGGAATCGAATATTGGCGATCTTATTGTACCAGAAGGGTGGAGTCCTTGGGCTGGAACTCAATTTCTGAATACATTGTATTATGCTGAGTATGCTAATACAGGACCTGGTGCTAATCTTAATGGAAGGGTTAAGTGGAAAGGTTATCATCCAAATATTAATAGGAACGAAGCTGCTCAATTTACTGCAGGACAGTTCCTTAGAGCTGGACCTGCTGGAAGAGCTGAGGATTGGTTGACGGCTACTGGTGTTCCTTATGCACTTGGATTTGGAAAATAG 1722 0.4408 MNGKVLVSGVSIILVVGVAIGVVVVVNKQGSDPQLAAHEKNVQSMCQATEDQKLCHDTLISAKPANSSDPTAYLAVVVQASAQKVIAALNMTDRLSIEHGDKDPSIKMALDDCKDLMQFALDSLEASGNLVRDNNIQAIHDQTPDFRNWLSAVISYQQSCMDGFNNETNGEDKIKQQLQTDSLDQMEKLTGITLDIVASMGNILQAFDLKLELNPASRRLLDANEIDNEGLPTWFSATDRKLLANHPGGGPAPNAVVAKDGSGKFKSVKEAIDSYPKDFKGRYIIYVKAGVYDEYITIPKKSINILMYGDGPTKTIITGHKNFADGTKTMQTATFANTAPGFIAKSIAFENTAGAAKHQAVAFRNQGDMSAFFDCAMHGFQDTLYVQTNRQFYRNCEISGTVDFIFGSSPTLIQNSRIIVRKPGPGQFNTVTADGTKQRNMASGIVIQNCEIVPEKDLFPVRMQFKSYLGRPWKDYSRTVVMESNIGDLIVPEGWSPWAGTQFLNTLYYAEYANTGPGANLNGRVKWKGYHPNINRNEAAQFTAGQFLRAGPAGRAEDWLTATGVPYALGFGK 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02096 573 SMART PMEI_2 37 196 IPR006501 GO:0004857
Vifa3g02096 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Vifa3g02096 573 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857
Vifa3g02096 573 FunFam Pectinesterase 250 571 - -
Vifa3g02096 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 200 IPR035513 -
Vifa3g02096 573 CDD PMEI-like_3 44 200 - -
Vifa3g02096 573 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Vifa3g02096 573 FunFam Pectinesterase 38 201 - -
Vifa3g02096 573 Gene3D - 251 571 IPR012334 -
Vifa3g02096 573 Pfam Pectinesterase 254 549 IPR000070 GO:0030599|GO:0042545
Vifa3g02096 573 NCBIfam pectinesterase inhibitor domain 22 197 IPR006501 GO:0004857
Vifa3g02096 573 PANTHER PECTINESTERASE 18 561 - -
Vifa3g02096 573 SUPERFAMILY Pectin lyase-like 251 568 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02096 Vifa-Chr3 520360179 520361984 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02096 39 571 Carbohydrate Esterase AT2G26450 40.858 3.77e-139 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02096 K01051 - gmx:100775246 894.034