Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02095 ATGGAAAGCAAAATAATTGTTTCTGCAGTTTCTCTCATTCTTGTAGTTGGTGTTGCATTAGGTGTTGTTGCTCTTGTTCGAACCAACCAGCCAGGTGATAGTGGAGGTGGCGGAGATTTGAATGCGCATACTAAAGCGGTTAAGGCCGTGTGTCAAAACAGCGATGACAATAAATTCTGTGTTGATACTCTAAGTCCTGTTAACACATCGGATCCAAATGATTACATAAAAGCCGTTGTTAAAACTTCCTTGGAAAGTGTCTTCAAAGCGTTAAACTTGAGCGATAAGCTCATAATTGAAAATGAAAAGAAAGAAGAACCTACAAAGATGGCACTTGAGGATTGTAAAGACTTGTTACAATTCGCTATTGATGAGTTACAAGCCTCTAGTATTTTAGTTAATGATGGCCATGGTCATAACCCTAGCGAACGTGCTGCGGATCTTAAGAACTGGTTAGGTGCTGTTATTGCGTACCAACAATCATGTCTTGATGGTTTTGAAACAGAAGGCGAAAAGAAGATTCAATCACAGTTACAAACTGGTAGTTTGGACCAGGTAGAGAAACTTACCGCGTTGGCGCTTGATATTGTGACTGCAGTTTCGCAAGTATTAGCTTCTCTGAATTTGGATTTGAATGTGCAACCTTCACATCGTCGTCTTTTTGGGGTGGATAGCAATGGTTACCCCGAATGGATGACTGGCCCGGATCGTAAACTGTTGGCTGATATGAGTACTGGAGCTGCCGTTACGCCTAATGTGGTTGTTGCTAAAGATGGTAGTGGCCAATTTAAGACAGTTCTTGAGGCGATTAATTCGTACCCGAAAAATCATGTTGGTAGATATGTTATCTACGTTAAGGCCGGTGTCTATGATGAATATATTCAGATTGACAAGAAGAAGAAGAAAATTTTAATGTACGGTGATGGCCCTTCAAAGACCATTATCACCGGAAAGAAAAATGTTGTTGATGGTTGGAAGACCATGAGATCTGCTACATTCTCTACTGTTGCTGAGGATTTCATTTGCAAGGCAATTGCATTTGAGAATACTGCAGGAGCAAGCAAACATCAAGCAGTGGCACTACGAGTGCAAGGAGACCGATCGGCTTTCTACGACTGTGCCATGCGAGGTTACCAAGACACATTATACGCGCACGCCCATCGACAGTTCTATAGAAACTGTGAAATTTCTGGGACAGTGGATTTCATTTTCGGCTATGGATCAACGCTTATACAAAACTCGAGGATAATAGTCCGAAAGCCCGATGCAAATCAACAAAACATCGTTGTAGCCGACGGAACAATTCAAAAGAACATGCCAACGGGGGTTGTCATGCAGAACTGCGAGATCATGCCAGAACCAGCACTTCAGGCAGATAGATTGAAGGTGAAATCGTATCTGGCAAGACCATGGAAAGCATATTCAAGGGCAGTATTCATGGAAAATACAATTGGTGATTTGATTCAACCAGTGGGATTTCTTCCTTGGAATGGGAATTTGTTTCTTGACACATGTTACTTTGCTGAGTATGCTAATACTGGACCTGGTGCAGACCTTAAGGCAAGAGTTACGTGGAGCAAAGGTGTTCTTAGTAAAGCTGATGCAATTAAATATACTGCTAGTCAATGGCTTCAAGGTGGAATTTGGTTGCCTGCTACAGGTATACCATTTGAGCTTGGCTTCTCTAAACCTTGA 1695 0.4195 MESKIIVSAVSLILVVGVALGVVALVRTNQPGDSGGGGDLNAHTKAVKAVCQNSDDNKFCVDTLSPVNTSDPNDYIKAVVKTSLESVFKALNLSDKLIIENEKKEEPTKMALEDCKDLLQFAIDELQASSILVNDGHGHNPSERAADLKNWLGAVIAYQQSCLDGFETEGEKKIQSQLQTGSLDQVEKLTALALDIVTAVSQVLASLNLDLNVQPSHRRLFGVDSNGYPEWMTGPDRKLLADMSTGAAVTPNVVVAKDGSGQFKTVLEAINSYPKNHVGRYVIYVKAGVYDEYIQIDKKKKKILMYGDGPSKTIITGKKNVVDGWKTMRSATFSTVAEDFICKAIAFENTAGASKHQAVALRVQGDRSAFYDCAMRGYQDTLYAHAHRQFYRNCEISGTVDFIFGYGSTLIQNSRIIVRKPDANQQNIVVADGTIQKNMPTGVVMQNCEIMPEPALQADRLKVKSYLARPWKAYSRAVFMENTIGDLIQPVGFLPWNGNLFLDTCYFAEYANTGPGADLKARVTWSKGVLSKADAIKYTASQWLQGGIWLPATGIPFELGFSKP 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02095 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 201 IPR035513 -
Vifa3g02095 564 Pfam Pectinesterase 252 546 IPR000070 GO:0030599|GO:0042545
Vifa3g02095 564 SUPERFAMILY Pectin lyase-like 247 559 IPR011050 -
Vifa3g02095 564 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Vifa3g02095 564 PANTHER PECTINESTERASE 15 551 - -
Vifa3g02095 564 Pfam Plant invertase/pectin methylesterase inhibitor 46 196 IPR006501 GO:0004857
Vifa3g02095 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 199 IPR035513 -
Vifa3g02095 564 NCBIfam pectinesterase inhibitor domain 19 197 IPR006501 GO:0004857
Vifa3g02095 564 CDD PMEI-like_3 49 201 - -
Vifa3g02095 564 Gene3D - 246 561 IPR012334 -
Vifa3g02095 564 SMART PMEI_2 42 196 IPR006501 GO:0004857
Vifa3g02095 564 FunFam Pectinesterase 246 561 - -
Vifa3g02095 564 FunFam Pectinesterase 43 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02095 Vifa-Chr3 520331121 520332911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02095 4 561 Carbohydrate Esterase AT3G05610 40.497 1.10e-145 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02095 K01051 - gmx:100820142 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02095 3 520331121 520332911 Vifa3g02095 3 520331121 520332911 ECH