Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02083 ATGGCATCTTCATTCTCAACTCAGCTGGTGCAGAGTCAGAACCTACTCCCCCGCTTTCATGCTGTCCAGGGGAAGCCACATGTAGTTTCTAGCATTGGATGCAGTAAATTGTCATCAACATATCATTATGCACCGAGGCTTTCTGTTTCACAACAATCTAAAGCCAAATCAATCACTTCTCGGAGAATAACATGTGCTAGTGGTGCTCAGGGAGAGGTTGCAGAGCTGCAAGCCAAAGTGACAAGCAAAATTTTCTTTGATATAGAAATTGGGGGTGAATCTGCTGGAAGGATTGTAATTGGTCTATTTGGAGATGCTGTTCCTAAAACTGTTGAGAATTTCAAAACATTGTCTACAGGAGCGAAAGGATATGGTTACCAAGGAAGCTTCTTCCATCGTATAATACCAAATTTCATGATTCAGGGAGGCGATTTCACCGAAGGAAATGGTACTGGTGGAGTCAGTATCTATGGTTCTAAATTTGAAGATGAGAGTTTTGACTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCGAATGCAGGTCCTAATACCAATGGCAGTCAATTTTTTATTTGCACTGTACCGACTCCATGGTTAGACAATCGCCATGTGGTGTTTGGACATGTCATTGAAGGACTGGATGTTGTGAAGCAACTTGAATCACAAGAGACAAGCAAGCTAGACAATAGTCCCAAGAAACCGTGCAAAATTGCCAAGTCTGGAGAACTGCCTTTAGATGGTTGA 747 0.4257 MASSFSTQLVQSQNLLPRFHAVQGKPHVVSSIGCSKLSSTYHYAPRLSVSQQSKAKSITSRRITCASGAQGEVAELQAKVTSKIFFDIEIGGESAGRIVIGLFGDAVPKTVENFKTLSTGAKGYGYQGSFFHRIIPNFMIQGGDFTEGNGTGGVSIYGSKFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDVVKQLESQETSKLDNSPKKPCKIAKSGELPLDG 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02083 248 Gene3D - 72 247 IPR029000 -
Vifa3g02083 248 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 86 241 IPR002130 GO:0000413|GO:0003755
Vifa3g02083 248 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 126 143 IPR020892 GO:0003755|GO:0006457
Vifa3g02083 248 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 102 117 IPR002130 GO:0000413|GO:0003755
Vifa3g02083 248 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 189 201 IPR002130 GO:0000413|GO:0003755
Vifa3g02083 248 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 174 189 IPR002130 GO:0000413|GO:0003755
Vifa3g02083 248 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 143 IPR002130 GO:0000413|GO:0003755
Vifa3g02083 248 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 202 217 IPR002130 GO:0000413|GO:0003755
Vifa3g02083 248 CDD cyclophilin_ABH_like 82 242 - -
Vifa3g02083 248 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 84 244 - -
Vifa3g02083 248 FunFam Peptidyl-prolyl cis-trans isomerase 71 248 - -
Vifa3g02083 248 MobiDBLite consensus disorder prediction 223 248 - -
Vifa3g02083 248 SUPERFAMILY Cyclophilin-like 75 244 IPR029000 -
Vifa3g02083 248 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 85 243 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02083 Vifa-Chr3 518619408 518620793 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02083 50 238 U-box Gene Family AT5G67530 39.474 6.67e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02083 K03768 - gmx:100526955 354.755