Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02076 ATGGGAAGACACTCTTGCTGCTACAAGCAGAAGCTTAGGAAGGGACTATGGTCACCAGAAGAAGATGAAAAATTACTAAGGCATATAACAAAATATGGGCATGGATGTTGGAGTTCTGTACCTAAACAAGCAGGTTTGCAAAGATGTGGTAAGAGTTGCAGACTTAGATGGATTAATTACTTAAGACCTGATTTAAAAAGAGGAACGTTTTCACAAGAGGAAGAGAATCTCATTGTTGAACTTCATGCCGTATTAGGCAATAGATGGTCTCAAATTGCGGCGCAATTGCCGGGGAGGACTGACAATGAAATAAAGAATTTATGGAACTCTTGTTTGAAGAAGAAACTGCGGCAGAAAGATGAGCAGAGAACATCATCTTCCATTTCACCCAAAGAATATGCAGTCGAAATGGAAGGCTCTTGCAACAAAGAGTTTTTCATTGACAGGTTCATCACTTCCAACTCTCATCACACTGATTTGTTGGGGAGTTATCCTATTCCGATGAGTTACGCCAACAATGAAAATGATGGTAGCCATTGGTTTAACCAATCTGGAAAAACTTTTGAGATGAAATATTCTGATCACTTTCATTTCAGTTCTGCTACAGCAGCACCAGCAGCAACAACTATGTTTCTTCCTAACTCCTTTTGCTGCAACAACTCCCTCGATATTCCTCCGGTTCATAATGTTTCTACCGAGATAAACTTGCAAAACAACAATTTTTCTTGGGGAGGATTGATGGAAAGTCATCATCATACAGAAGAAGCAAAGTGGGATGATACTACTACTACTGATAATAATAACTACTTTCATAATCCGATTTTAATGTTGGCTTCTGAATCGTTATGCAATGAGATCAAGCCGCAAATGAATTTAGTACCCGATGATTTCGGGACTATTTTGCCTCCTACAAAGCAAGAACAGTCACATACACAACAAAATTCTAATATCTTTTCTAAGGATATTCAGAAACTCCGAGAAGCTTTCGGAGATATGTGA 999 0.3874 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKDEQRTSSSISPKEYAVEMEGSCNKEFFIDRFITSNSHHTDLLGSYPIPMSYANNENDGSHWFNQSGKTFEMKYSDHFHFSSATAAPAATTMFLPNSFCCNNSLDIPPVHNVSTEINLQNNNFSWGGLMESHHHTEEAKWDDTTTTDNNNYFHNPILMLASESLCNEIKPQMNLVPDDFGTILPPTKQEQSHTQQNSNIFSKDIQKLREAFGDM 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02076 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa3g02076 332 Gene3D - 11 67 - -
Vifa3g02076 332 FunFam Myb transcription factor 69 116 - -
Vifa3g02076 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa3g02076 332 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vifa3g02076 332 SMART sant 13 63 IPR001005 -
Vifa3g02076 332 SMART sant 66 114 IPR001005 -
Vifa3g02076 332 FunFam Myb transcription factor 11 67 - -
Vifa3g02076 332 CDD SANT 17 61 IPR001005 -
Vifa3g02076 332 Gene3D - 69 137 - -
Vifa3g02076 332 PANTHER MYB DOMAIN PROTEIN 55 1 304 - -
Vifa3g02076 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa3g02076 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa3g02076 332 CDD SANT 69 109 IPR001005 -
Vifa3g02076 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa3g02076 332 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02076 Vifa-Chr3 518311769 518313091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02076 1 117 MYB Transcription Factor Family AT4G01680 96.581 1.87e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa3g02076 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02076 K09422 - gmx:100782199 388.652