Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02069 ATGGAGGTAGAGAATGGTAGTGATGAGTTAGGAAATAATCATGAGCAGCATGATGAAGCAACAACGTCGGAGAATAATGATTCTACTGACATTTTATTAATGGTGGTTGGAACTATCGGTGCTGTTGGAAACGGTTTGGGTTTACCTCTCATGACTTTGTTGTTTGGTCAAATGATTAATAGTTTCGGTAGTAACCAATCTAACACAGATGATGTTGTTGAACAAGTGTCCAAGGTATCTCTGAAATTTATATATTTGGCAGTAGGATGTGGGGTGGCAGCATTTTTCCAGGTGAGTTGTTGGATGGTTACCGGAGAAAGACAAGCGGCGAGAATTAGAGGATTGTATTTGAAAACAATATTAAGACAAGATGTTGCTTTCTTTGATAAAGAAACAAACACAGGAGAAGTTGTAGGGAGAATGTCTGGTGATACTGTTCTAATTCAAGATGCAATGGGTGAGAAGGTTGGGAAATTTCTGCAGCTGATAGCAACATTCATTGGTGGTTTTGTGATAGCATTTATCAAAGGGTGGCTTCTTACTCTTGTTATGATGTCGACTCTTCCGCTTCTTGCTGTGTCAGGTGCTGTCATGGCTGTTATTATAGGCAAGATGGCTTCTAAAGGTCAAACTGCTTATGCAAAAGCTGCACATGTTGTTGAACAAACAATTGGATCAATAAGAACTGTTGCGTCCTTTACTGGCGAAAAGCAAGCAGTGTCTAATTATAGAGTATTTCTTGTAGATGCTTACAAATCAGGAGTTTTTGAAGGTACTATAGCTGGAGTAGGCCTAGGCACAGTTATGTTTGTTATTTTCTGCGGTTATGCTTTAGCTGTATGGTTTGGTGCAAAGATGATAATGGAAAAAGGATATAATGGTGGCACCGTGATTAATGTGATTATCGCCGTGTTAACTGCTTCCATGTCTCTAGGACAGGCATCACCAAGTCTGAGTGCTTTTGCGGCAGGTCAGGCGGCCGCTTATAAAATGTTTGAGACAATTAAGAGGAAGCCAGAGATAGATGCTTATGATCCAAATGGAAAAACATTAGAAGATATTCAAGGTGAAGTAGATTTAAAGGAAGTTTACTTTAGTTATCCTGCAAGACCTGAAGAACTGATATTCAATGGATTCTCTCTTCATATATCGAGTGGTACAACTGCGGCATTAGTTGGACAAAGTGGAAGTGGAAAGTCCACCGTTATCAGTTTGGTAGAAAGATTCTATGATCCACAGGCAGGTGAAGTTCTTATTGATGGCATTAACATGAAAGAATTTCAGCTCAGATGGATCAGAGGGAAAATTGGTCTTGTCAGCCAGGAGCCAGTGCTGTTTTCGTCCAGCATTAAGGACAACATTGCTTATGGTAAAGATGGAGCCACAATTGAAGAGATAAGATCTGCGTCTGAACTTGCAAATGCTGCCAAATTCATTGATAAATTGCCACAGGGATTGGATACAATGGTTGGTGACCATGGAACCCAGCTCTCTGGTGGACAGAAGCAGCGCATTGCCATCGCAAGAGCAATCCTTAAGAATCCAAGAATTCTTCTTCTAGATGAAGCTACAAGTGCACTTGATGCAGAATCTGAAAGAGTAGTTCAAGAGGCTCTAGATAGGATCATGGTCAACAGAACCACGATTGTTGTTGCACATCGCTTGAGCACAATTAGGAATGCTGACATGATTGCTGTAATCCATAGAGGGAAAATGGTTGAGAAAGGAACACACTCAGAATTACTAAAGGATCCTGAAGGAGCTTATTCACAACTCATACGCTTACAAGAAGTAAATAGAGAATCAGACGAAAGTACAGATAATAATGGCAAGAGAGAGCTTTCTGCAGAATCCTTTAGACGTTCGAGTCAAAAGAAGTCGCTTCAAAGATCTATCAGTAGGGGATCATCTTTAGGGAATAGCAGTCGCCATTCATTTTCAGTTTCATTCGGTTTACCAACAGGTGTTAATGTCACTGATCCTGAAATTGAAGATTTACCAACCAAAGAAAAAGCACAAGAAATTCCACTAAGTCGCCTTGCTTCCCTCAACAAGCCAGAGATTCCAGTTTTACTATTTGGATGTTTAGCTGCCATAGGAAATGGTGTCATACTTCCAATATTCGGCATTCTGATTTCTAGCATCATCAAAACATTTTATGAACCGTTTGATGAGATGAAAAAGGACTCCAAGTATTGGGCATTAATGTTTATGCTCCTTGGTTTTGCATCATTGGTGGTTATTCCAGCACGTGGTTATTTTTTCTCCGTGGCTGGATGCAAGTTAATCGAACGTATCAGGCTAATATGTTTTGAGAAGGTGGTGAGCATGGAGGTTGGTTGGTTCGATGAGCCTGAAAACTCTAGCGGCGCAGTTGGTGCAAGGCTTTCAGCAGACGCTGCTTCTGTCCGTGCGCTTGTTGGTGATGCATTAGGATTGTTGGTTCAGAATTTGGCTACTGCATTGGCTGGTTTGATTATTGCTTTTGTTGCGAGTTGGCAGCTCGCATTGATTATTCTTGTCTTGATTCCTCTGATTGGATTAAACGGATACGTTCAAATGAAATTCATGAAGGGATTCAGCGCAGATGCAAAGATGATGTACGAGGAGGCTAGTCAAGTTGCAAATGATGCAGTTGGAAGTATAAGAACTGTGGCATCTTTTTGTGCCGAAGATAAGGTTATGGAACTATATAGAAAGAAATGTGAAGGTCCCATGAAAACAGGAATAAGGGAAGGGATAATCAGTGGAACAGGTTTTGGAGTTTCATTTTTCTTATTGTTTTGTGTCTATGCAACGAGTTTCTACGCAGGAGCTAGACTTGTGAAAGCTGGGGACGCAACATTTTCAGATGTTTTCCGGGTTTTCTTTGCATTAACTATGGCGGCTCTTGGTGTTTCTCAGTCAAGTTCCTTTGCTCCTGACTCCAGTAAAGCAAAATCAGCTACTGCTTCGATATTTGGAATGATTGATAAGAAATCTAAGATAGATCCAAGTGATGAATCCGGTACCACTCTAGACAACGTTAAAGGCGAAATTGAACTTCGTCATATAAGCTTCAAGTATCCATCTAGGCCTGATATTCAGATTTTCAGAGACCTCAACTTAACCATCCATTCTGGCAAGACAGTAGCACTTGTTGGTGAAAGTGGAAGCGGGAAATCAACAGTGATTTCTTTGTTGCAAAGATTTTATGATCCTGATTCAGGTGTCATTACACTTGACGGGATAGAAATTCGTCAGTTACAACTTAAGTGGTTAAGGCAGCAAATGGGTCTGGTAAGCCAAGAGCCAGTATTATTCAATCACACTATACGTGCTAATATTGCTTATGGAAAAGGTGGAAATGCAACTGAAGCAGAAATCGTAGCTGCCTCTGAATTAGCCAACGCTCATAGATTCATCAGTGGCTTACAGCAGGGTTATGATACAATAGTGGGAGAGAGGGGAACTCAATTATCAGGTGGACAGAAACAAAGGGTGGCCATTGCACGTGCTATAATCAAAAGTCCAAAGATATTGTTACTTGATGAGGCCACTAGTGCATTGGACGCTGAGTCAGAGAGAGTTGTTCAAGATGCATTGGATAAAGTAATGGTGAATAGAACCACTGTGGTTGTGGCACATCGTTTGTCTACAATTAAAAATGCAGATGTTATTGCTGTTGTCAAGAATGGTGTTATAGTAGAAAAAGGAAGGCACGAAACACTTATTAATGTGAAAGATGGATTTTATGCTTCCTTAGTTCAACTTCATACAAGTGCTAAAACAGTATGA 3777 0.4053 MEVENGSDELGNNHEQHDEATTSENNDSTDILLMVVGTIGAVGNGLGLPLMTLLFGQMINSFGSNQSNTDDVVEQVSKVSLKFIYLAVGCGVAAFFQVSCWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLIATFIGGFVIAFIKGWLLTLVMMSTLPLLAVSGAVMAVIIGKMASKGQTAYAKAAHVVEQTIGSIRTVASFTGEKQAVSNYRVFLVDAYKSGVFEGTIAGVGLGTVMFVIFCGYALAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGQASPSLSAFAAGQAAAYKMFETIKRKPEIDAYDPNGKTLEDIQGEVDLKEVYFSYPARPEELIFNGFSLHISSGTTAALVGQSGSGKSTVISLVERFYDPQAGEVLIDGINMKEFQLRWIRGKIGLVSQEPVLFSSSIKDNIAYGKDGATIEEIRSASELANAAKFIDKLPQGLDTMVGDHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALDRIMVNRTTIVVAHRLSTIRNADMIAVIHRGKMVEKGTHSELLKDPEGAYSQLIRLQEVNRESDESTDNNGKRELSAESFRRSSQKKSLQRSISRGSSLGNSSRHSFSVSFGLPTGVNVTDPEIEDLPTKEKAQEIPLSRLASLNKPEIPVLLFGCLAAIGNGVILPIFGILISSIIKTFYEPFDEMKKDSKYWALMFMLLGFASLVVIPARGYFFSVAGCKLIERIRLICFEKVVSMEVGWFDEPENSSGAVGARLSADAASVRALVGDALGLLVQNLATALAGLIIAFVASWQLALIILVLIPLIGLNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEDKVMELYRKKCEGPMKTGIREGIISGTGFGVSFFLLFCVYATSFYAGARLVKAGDATFSDVFRVFFALTMAALGVSQSSSFAPDSSKAKSATASIFGMIDKKSKIDPSDESGTTLDNVKGEIELRHISFKYPSRPDIQIFRDLNLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGVITLDGIEIRQLQLKWLRQQMGLVSQEPVLFNHTIRANIAYGKGGNATEAEIVAASELANAHRFISGLQQGYDTIVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINVKDGFYASLVQLHTSAKTV 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02069 1258 SUPERFAMILY ABC transporter transmembrane region 679 997 IPR036640 GO:0005524|GO:0016020
Vifa3g02069 1258 CDD ABC_MTABC3_MDL1_MDL2 1013 1251 - -
Vifa3g02069 1258 Gene3D - 356 609 IPR027417 -
Vifa3g02069 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 35 323 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g02069 1258 CDD ABC_MTABC3_MDL1_MDL2 358 596 - -
Vifa3g02069 1258 MobiDBLite consensus disorder prediction 7 24 - -
Vifa3g02069 1258 ProSitePatterns ABC transporters family signature. 1153 1167 IPR017871 GO:0005524|GO:0016887
Vifa3g02069 1258 SUPERFAMILY ABC transporter transmembrane region 31 342 IPR036640 GO:0005524|GO:0016020
Vifa3g02069 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 358 594 IPR003439 GO:0005524
Vifa3g02069 1258 CDD ABC_6TM_Pgp_ABCB1_D2_like 681 996 - -
Vifa3g02069 1258 MobiDBLite consensus disorder prediction 625 643 - -
Vifa3g02069 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 692 978 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g02069 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1003 1251 IPR027417 -
Vifa3g02069 1258 CDD ABC_6TM_Pgp_ABCB1_D1_like 34 319 - -
Vifa3g02069 1258 ProSitePatterns ABC transporters family signature. 497 511 IPR017871 GO:0005524|GO:0016887
Vifa3g02069 1258 Pfam ABC transporter 377 525 IPR003439 GO:0005524
Vifa3g02069 1258 SMART AAA_5 1040 1233 IPR003593 GO:0016887
Vifa3g02069 1258 SMART AAA_5 385 571 IPR003593 GO:0016887
Vifa3g02069 1258 FunFam ABC transporter B family member 9 23 355 - -
Vifa3g02069 1258 MobiDBLite consensus disorder prediction 598 643 - -
Vifa3g02069 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1013 1250 IPR003439 GO:0005524
Vifa3g02069 1258 Gene3D - 1003 1257 IPR027417 -
Vifa3g02069 1258 MobiDBLite consensus disorder prediction 598 624 - -
Vifa3g02069 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 596 IPR027417 -
Vifa3g02069 1258 PANTHER ABC TRANSPORTER B FAMILY 25 599 IPR039421 -
Vifa3g02069 1258 FunFam ABC transporter B family member 9 980 1002 - -
Vifa3g02069 1258 Gene3D ABC transporter type 1, transmembrane domain 81 987 IPR036640 GO:0005524|GO:0016020
Vifa3g02069 1258 Pfam ABC transporter 1032 1181 IPR003439 GO:0005524
Vifa3g02069 1258 FunFam ABC transporter B family member 1 348 597 - -
Vifa3g02069 1258 Pfam ABC transporter transmembrane region 691 963 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g02069 1258 Pfam ABC transporter transmembrane region 35 309 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g02069 1258 FunFam ABC transporter B family member 1 1003 1253 - -
Vifa3g02069 1258 MobiDBLite consensus disorder prediction 1 25 - -
Vifa3g02069 1258 FunFam ABC transporter B family member 1 671 979 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02069 Vifa-Chr3 515477071 515482213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02069 27 1257 Calmodulin-binding Proteins AT2G36910 45.455 0.0 1075
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02069 K05658 - gmx:100777909 2128.98