Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02065 ATGCAAGTCAGTGTAGACCACGCACGAAAGCATGGCGGTACAGGGCTAGGACTAGCAATATGCAAACAATTGGTTGAGTTGATGGGGGGTAATCTAACAGTGTCTAGCAAAGAACAACATGGTTCTACTTTCACATTCATTCTGCCATACAGGGTCTCAATTGCTTGTGATAGTGCTGATTACTCCGATGAATTCTCAGACATGGAGCATAACGAAGTCGCTTCTGATGATACAACAACAGAAGGTTTCTTCCAATTCCACACAAACCGAACTCACAAGCTATCGCCACACAAATTCAGTGGATTTTCCGAGAGTTCATTCTCATTTCCCGCTATTTCTAATGACATCATATCAAAAGGGACGTGTTCTTTCGATGACTCATCTTCAGTTGTTGACGCCTCAGACATGTCTGAATCAGCTAGTTCATCTAGTAATAAACATCATTTGTATAACACTCATGCATGGTTTCAAAATGATAGTGCAGATTCTTCTCAGAATATGGTGATCCTTCTTGTGGAAGATAACAAGATCAACATCATGGTGACACAATCCATGATGAAGCAGTTGGGTCATAACATTGATGTTGTCACTAATGGAGCTGAAGCCGTGCGAGCAGTACAACGCTGTACTTATGACTTGGTTCTGATGGACGTGTGCATACCGATTATGGAGGGAACTCCTAGCCCGTCCACGGTTCAGCCCTGCATAGAAAGATTAAAAAGCAAAAATCAATAA 735 0.4204 MQVSVDHARKHGGTGLGLAICKQLVELMGGNLTVSSKEQHGSTFTFILPYRVSIACDSADYSDEFSDMEHNEVASDDTTTEGFFQFHTNRTHKLSPHKFSGFSESSFSFPAISNDIISKGTCSFDDSSSVVDASDMSESASSSSNKHHLYNTHAWFQNDSADSSQNMVILLVEDNKINIMVTQSMMKQLGHNIDVVTNGAEAVRAVQRCTYDLVLMDVCIPIMEGTPSPSTVQPCIERLKSKNQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02065 244 Gene3D - 1 57 IPR036890 -
Vifa3g02065 244 PRINTS Bacterial sensor protein C-terminal signature 36 49 IPR004358 GO:0016310|GO:0016772
Vifa3g02065 244 PRINTS Bacterial sensor protein C-terminal signature 12 30 IPR004358 GO:0016310|GO:0016772
Vifa3g02065 244 ProSiteProfiles Histidine kinase domain profile. 1 52 IPR005467 -
Vifa3g02065 244 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 6 50 IPR036890 -
Vifa3g02065 244 CDD REC_hyHK_CKI1_RcsC-like 169 225 - -
Vifa3g02065 244 Gene3D - 143 229 - -
Vifa3g02065 244 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 1 225 - -
Vifa3g02065 244 Pfam Response regulator receiver domain 169 226 IPR001789 GO:0000160
Vifa3g02065 244 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 7 50 IPR003594 -
Vifa3g02065 244 SUPERFAMILY CheY-like 165 226 IPR011006 -
Vifa3g02065 244 ProSiteProfiles Response regulatory domain profile. 168 244 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02065 Vifa-Chr3 515007426 515008233 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02065 169 233 Histidine Kinase Gene Family AT5G10720 58.462 2.48e-21 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa3g02065 Response_reg 5.7e-10 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02065 - - gmx:100819520 244.588